Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4930000100
View in Genome Browser
Position
JAEQKX010001114.1:2814-4317 (-)
1503bp
Gene Type
gene
Gene Description (Protein Product)
Transcription initiation factor IIB
Organism
Salix suchowensis
Also AS AT3G10330

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C5045000400 Transcription regulatory protein SNF2-like
gene-IMY05_C5237000800 Transcription factor
gene-IMY05_C4947000500 SWIRM-domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0000976 transcription cis-regulatory region binding MF
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding MF
GO:0000988 obsolete transcription factor activity, protein binding MF
GO:0000989 obsolete transcription factor activity, transcription factor binding MF
GO:0000990 obsolete transcription factor activity, core RNA polymerase binding MF
GO:0000991 obsolete transcription factor activity, core RNA polymerase II binding MF
GO:0000993 RNA polymerase II complex binding MF
GO:0001012 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001046 core promoter sequence-specific DNA binding MF
GO:0001047 core promoter sequence-specific DNA binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding MF
GO:0001098 basal transcription machinery binding MF
GO:0001099 basal RNA polymerase II transcription machinery binding MF
GO:0001112 DNA-templated transcription open complex formation BP
GO:0001113 transcription open complex formation at RNA polymerase II promoter BP
GO:0001120 protein-DNA complex remodeling BP
GO:0001129 obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly MF
GO:0001132 obsolete RNA polymerase II transcription factor activity, TBP-class protein binding MF
GO:0001139 RNA polymerase II complex recruiting activity MF
GO:0001173 DNA-templated transcriptional start site selection BP
GO:0001174 transcriptional start site selection at RNA polymerase II promoter BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003682 chromatin binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003824 catalytic activity MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005667 transcription regulator complex CC
GO:0005669 transcription factor TFIID complex CC
GO:0005694 chromosome CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006351 DNA-templated transcription BP
GO:0006352 DNA-templated transcription initiation BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006366 transcription by RNA polymerase II BP
GO:0006367 transcription initiation at RNA polymerase II promoter BP
GO:0006464 protein modification process BP
GO:0006473 protein acetylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009301 snRNA transcription BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016073 snRNA metabolic process BP
GO:0016407 acetyltransferase activity MF
GO:0016591 RNA polymerase II, holoenzyme CC
GO:0016604 nuclear body CC
GO:0016740 transferase activity MF
GO:0016746 acyltransferase activity MF
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups MF
GO:0017025 TBP-class protein binding MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0022607 cellular component assembly BP
GO:0030880 RNA polymerase complex CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031334 positive regulation of protein-containing complex assembly BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0032993 protein-DNA complex CC
GO:0034367 protein-containing complex remodeling BP
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0035257 nuclear receptor binding MF
GO:0035821 modulation of process of another organism BP
GO:0036211 protein modification process BP
GO:0042795 snRNA transcription by RNA polymerase II BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043175 RNA polymerase core enzyme binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0043388 positive regulation of DNA binding BP
GO:0043412 macromolecule modification BP
GO:0043543 protein acylation BP
GO:0043565 sequence-specific DNA binding MF
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043902 obsolete positive regulation of multi-organism process BP
GO:0043903 regulation of biological process involved in symbiotic interaction BP
GO:0043921 modulation by host of viral transcription BP
GO:0043923 positive regulation by host of viral transcription BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044093 positive regulation of molecular function BP
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044403 biological process involved in symbiotic interaction BP
GO:0044419 biological process involved in interspecies interaction between organisms BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0044798 transcription regulator complex CC
GO:0044877 protein-containing complex binding MF
GO:0045893 positive regulation of DNA-templated transcription BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0045944 positive regulation of transcription by RNA polymerase II BP
GO:0046483 heterocycle metabolic process BP
GO:0046782 regulation of viral transcription BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0046966 nuclear thyroid hormone receptor binding MF
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048524 positive regulation of viral process BP
GO:0050434 positive regulation of viral transcription BP
GO:0050789 regulation of biological process BP
GO:0050792 regulation of viral process BP
GO:0050794 regulation of cellular process BP
GO:0051098 regulation of binding BP
GO:0051099 positive regulation of binding BP
GO:0051101 regulation of DNA binding BP
GO:0051123 RNA polymerase II preinitiation complex assembly BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051427 hormone receptor binding MF
GO:0051702 biological process involved in interaction with symbiont BP
GO:0051704 obsolete multi-organism process BP
GO:0051817 obsolete modulation of process of other organism involved in symbiotic interaction BP
GO:0051851 modulation by host of symbiont process BP
GO:0052312 obsolete modulation of transcription in other organism involved in symbiotic interaction BP
GO:0052472 modulation by host of symbiont transcription BP
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060260 regulation of transcription initiation by RNA polymerase II BP
GO:0060261 positive regulation of transcription initiation by RNA polymerase II BP
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070063 RNA polymerase binding MF
GO:0070897 transcription preinitiation complex assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090575 RNA polymerase II transcription regulator complex CC
GO:0097159 organic cyclic compound binding MF
GO:0097550 transcription preinitiation complex CC
GO:0097659 nucleic acid-templated transcription BP
GO:0098781 ncRNA transcription BP
GO:0140110 transcription regulator activity MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1902680 positive regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903508 positive regulation of nucleic acid-templated transcription BP
GO:1904796 regulation of core promoter binding BP
GO:1904798 positive regulation of core promoter binding BP
GO:1990114 RNA polymerase II core complex assembly BP
GO:1990234 transferase complex CC
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:1990841 promoter-specific chromatin binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000142 regulation of DNA-templated transcription initiation BP
GO:2000144 positive regulation of DNA-templated transcription initiation BP
GO:2000677 regulation of transcription regulatory region DNA binding BP
GO:2000679 positive regulation of transcription regulatory region DNA binding BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map03022 Basal transcription factors -