PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	gene-IMY05_C4450000600 View in Genome Browser
Position	JAEQKX010000663.1:23637-24946 (-) 1309bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the protein kinase superfamily
Organism	Salix suchowensis
Also AS	AT1G66750

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C4570000400 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

gene-IMY05_C4930000100 Transcription initiation factor IIB

gene-IMY05_C4826000100 DNA ligase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000228	nuclear chromosome	CC
GO:0000307	cyclin-dependent protein kinase holoenzyme complex	CC
GO:0000428	DNA-directed RNA polymerase complex	CC
GO:0000785	chromatin	CC
GO:0000790	chromatin	CC
GO:0001932	regulation of protein phosphorylation	BP
GO:0001934	positive regulation of protein phosphorylation	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004672	protein kinase activity	MF
GO:0004674	protein serine/threonine kinase activity	MF
GO:0004693	cyclin-dependent protein serine/threonine kinase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005667	transcription regulator complex	CC
GO:0005675	transcription factor TFIIH holo complex	CC
GO:0005694	chromosome	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006351	DNA-templated transcription	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006360	transcription by RNA polymerase I	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006370	7-methylguanosine mRNA capping	BP
GO:0006396	RNA processing	BP
GO:0006397	mRNA processing	BP
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008047	enzyme activator activity	MF
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008353	RNA polymerase II CTD heptapeptide repeat kinase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009452	7-methylguanosine RNA capping	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010562	positive regulation of phosphorus metabolic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016591	RNA polymerase II, holoenzyme	CC
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019207	kinase regulator activity	MF
GO:0019209	kinase activator activity	MF
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019538	protein metabolic process	BP
GO:0019887	protein kinase regulator activity	MF
GO:0019907	cyclin-dependent protein kinase activating kinase holoenzyme complex	CC
GO:0019908	nuclear cyclin-dependent protein kinase holoenzyme complex	CC
GO:0019912	cyclin-dependent protein kinase activating kinase activity	MF
GO:0022607	cellular component assembly	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022618	ribonucleoprotein complex assembly	BP
GO:0030234	enzyme regulator activity	MF
GO:0030295	protein kinase activator activity	MF
GO:0030880	RNA polymerase complex	CC
GO:0031123	RNA 3'-end processing	BP
GO:0031124	mRNA 3'-end processing	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031401	positive regulation of protein modification process	BP
GO:0031503	protein-containing complex localization	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032147	activation of protein kinase activity	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032774	RNA biosynthetic process	BP
GO:0032784	regulation of DNA-templated transcription elongation	BP
GO:0032786	positive regulation of DNA-templated transcription, elongation	BP
GO:0032806	carboxy-terminal domain protein kinase complex	CC
GO:0032968	positive regulation of transcription elongation by RNA polymerase II	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033674	positive regulation of kinase activity	BP
GO:0034243	regulation of transcription elongation by RNA polymerase II	BP
GO:0034402	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	BP
GO:0034613	protein localization	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034629	protein-containing complex localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0036031	recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex	BP
GO:0036211	protein modification process	BP
GO:0036260	RNA capping	BP
GO:0042325	regulation of phosphorylation	BP
GO:0042327	positive regulation of phosphorylation	BP
GO:0043085	positive regulation of catalytic activity	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043549	regulation of kinase activity	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044427	obsolete chromosomal part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044454	obsolete nuclear chromosome part	CC
GO:0044464	obsolete cell part	CC
GO:0044798	transcription regulator complex	CC
GO:0045859	regulation of protein kinase activity	BP
GO:0045860	positive regulation of protein kinase activity	BP
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0045937	positive regulation of phosphate metabolic process	BP
GO:0045944	positive regulation of transcription by RNA polymerase II	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051179	localization	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051338	regulation of transferase activity	BP
GO:0051347	positive regulation of transferase activity	BP
GO:0051641	cellular localization	BP
GO:0051726	regulation of cell cycle	BP
GO:0055029	nuclear DNA-directed RNA polymerase complex	CC
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070727	cellular macromolecule localization	BP
GO:0070816	phosphorylation of RNA polymerase II C-terminal domain	BP
GO:0070817	P-TEFb-cap methyltransferase complex localization	BP
GO:0070985	transcription factor TFIIK complex	CC
GO:0071619	phosphorylation of RNA polymerase II C-terminal domain serine 2 residues	BP
GO:0071620	phosphorylation of RNA polymerase II C-terminal domain serine 5 residues	BP
GO:0071704	organic substance metabolic process	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090575	RNA polymerase II transcription regulator complex	CC
GO:0097472	cyclin-dependent protein kinase activity	MF
GO:0097659	nucleic acid-templated transcription	BP
GO:0098772	molecular function regulator activity	MF
GO:0140096	catalytic activity, acting on a protein	MF
GO:0150005	enzyme activator complex	CC
GO:1900018	phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901921	phosphorylation of RNA polymerase II C-terminal domain involved in recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	BP
GO:1902494	catalytic complex	CC
GO:1902554	serine/threonine protein kinase complex	CC
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1902911	protein kinase complex	CC
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1903654	phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in positive regulation of transcription elongation from RNA polymerase II promoter	BP
GO:1903655	phosphorylation of RNA polymerase II C-terminal domain serine 2 residues involved in positive regulation of transcription elongation from RNA polymerase II promoter	BP
GO:1904029	regulation of cyclin-dependent protein kinase activity	BP
GO:1904031	positive regulation of cyclin-dependent protein kinase activity	BP
GO:1990234	transferase complex	CC
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map03420	Nucleotide excision repair	Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03022	Basal transcription factors	-