PPGR - Gene Detail

Basic Information

Gene ID	gene-IMY05_C4461000400 View in Genome Browser
Position	JAEQKX010000673.1:9390-11812 (+) 2422bp
Gene Type	gene
Gene Description (Protein Product)	Catalyzes the formation of S-adenosylmethionine from methionine and ATP
Organism	Salix suchowensis
Also AS	AT3G17390

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C4561000200 Cobalamin-independent methionine synthase

gene-IMY05_C5089001200 Homocysteine s-methyltransferase

gene-IMY05_C4585000700 Adenosylmethionine decarboxylase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000096	sulfur amino acid metabolic process	BP
GO:0000166	nucleotide binding	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004478	methionine adenosyltransferase activity	MF
GO:0005488	binding	MF
GO:0005524	ATP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006555	methionine metabolic process	BP
GO:0006556	S-adenosylmethionine biosynthetic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006790	sulfur compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009066	aspartate family amino acid metabolic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010494	cytoplasmic stress granule	CC
GO:0016740	transferase activity	MF
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	MF
GO:0017076	purine nucleotide binding	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0030554	adenyl nucleotide binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0032991	protein-containing complex	CC
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0035770	ribonucleoprotein granule	CC
GO:0036094	small molecule binding	MF
GO:0036464	cytoplasmic ribonucleoprotein granule	CC
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044272	sulfur compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046500	S-adenosylmethionine metabolic process	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901605	alpha-amino acid metabolic process	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00270	Cysteine and methionine metabolism	Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].