PPGR - Gene Detail

Basic Information

Gene ID	gene-IMY05_C4538000600 View in Genome Browser
Position	JAEQKX010000744.1:19997-23620 (-) 3623bp
Gene Type	gene
Gene Description (Protein Product)	The glycine cleavage system catalyzes the degradation of glycine
Organism	Salix suchowensis
Also AS	AT2G26080

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C4805000200 Aminotransferase class I and II

gene-IMY05_C4561000200 Cobalamin-independent methionine synthase

gene-IMY05_C5254000300 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0001505	regulation of neurotransmitter levels	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004375	glycine dehydrogenase (decarboxylating) activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005960	glycine cleavage complex	CC
GO:0006082	organic acid metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006544	glycine metabolic process	BP
GO:0006546	glycine catabolic process	BP
GO:0006730	one-carbon metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009063	amino acid catabolic process	BP
GO:0009069	serine family amino acid metabolic process	BP
GO:0009071	serine family amino acid catabolic process	BP
GO:0009987	cellular process	BP
GO:0016054	organic acid catabolic process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	MF
GO:0016642	oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019464	glycine decarboxylation via glycine cleavage system	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0032991	protein-containing complex	CC
GO:0042133	neurotransmitter metabolic process	BP
GO:0042135	neurotransmitter catabolic process	BP
GO:0042737	xenobiotic catabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044282	small molecule catabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046395	carboxylic acid catabolic process	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0071704	organic substance metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901605	alpha-amino acid metabolic process	BP
GO:1901606	alpha-amino acid catabolic process	BP
GO:1902494	catalytic complex	CC
GO:1990204	oxidoreductase complex	CC

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00630	Glyoxylate and dicarboxylate metabolism	-
map00260	Glycine, serine and threonine metabolism	Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].