Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
GSVIVG01026805001.Genoscope12X.g
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Position
chr15:7536947-7538035 (+)
1088bp
Gene Type
gene
Gene Description (Protein Product)
protein localization to nuclear inner membrane
Organism
Vitis vinifera
Also AS AT1G14850Vitvi15g01384

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
GSVIVG01031347001.Genoscope12X.g structural constituent of nuclear pore
GSVIVG01031348001.Genoscope12X.g structural constituent of nuclear pore
GSVIVG01034601001.Genoscope12X.g Nuclear pore complex protein
Regulatory gene
GSVIVG01000089001.Genoscope12X.g Protein ALWAYS EARLY
GSVIVG01000318001.Genoscope12X.g histone deacetylase
GSVIVG01000940001.Genoscope12X.g NAC transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000212 meiotic spindle organization BP
GO:0000226 microtubule cytoskeleton organization BP
GO:0000280 nuclear division BP
GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery BP
GO:0001508 action potential BP
GO:0001555 oocyte growth BP
GO:0001654 eye development BP
GO:0003006 developmental process involved in reproduction BP
GO:0003008 system process BP
GO:0003012 muscle system process BP
GO:0003013 circulatory system process BP
GO:0003015 heart process BP
GO:0003674 molecular_function MF
GO:0003682 chromatin binding MF
GO:0005198 structural molecule activity MF
GO:0005215 transporter activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005635 nuclear envelope CC
GO:0005643 nuclear pore CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0006403 RNA localization BP
GO:0006405 RNA export from nucleus BP
GO:0006406 mRNA export from nucleus BP
GO:0006606 protein import into nucleus BP
GO:0006611 protein export from nucleus BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006913 nucleocytoplasmic transport BP
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006936 muscle contraction BP
GO:0006941 striated muscle contraction BP
GO:0006996 organelle organization BP
GO:0006997 nucleus organization BP
GO:0006998 nuclear envelope organization BP
GO:0007010 cytoskeleton organization BP
GO:0007015 actin filament organization BP
GO:0007017 microtubule-based process BP
GO:0007049 cell cycle BP
GO:0007051 spindle organization BP
GO:0007053 spindle assembly involved in male meiosis BP
GO:0007088 regulation of mitotic nuclear division BP
GO:0007096 regulation of exit from mitosis BP
GO:0007140 male meiotic nuclear division BP
GO:0007154 cell communication BP
GO:0007267 cell-cell signaling BP
GO:0007275 multicellular organism development BP
GO:0007276 gamete generation BP
GO:0007281 germ cell development BP
GO:0007283 spermatogenesis BP
GO:0007292 female gamete generation BP
GO:0007295 growth of a germarium-derived egg chamber BP
GO:0007300 ovarian nurse cell to oocyte transport BP
GO:0007303 cytoplasmic transport, nurse cell to oocyte BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0007423 sensory organ development BP
GO:0007444 imaginal disc development BP
GO:0008015 blood circulation BP
GO:0008016 regulation of heart contraction BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008284 positive regulation of cell population proliferation BP
GO:0009506 plasmodesma CC
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009790 embryo development BP
GO:0009792 embryo development ending in birth or egg hatching BP
GO:0009888 tissue development BP
GO:0009987 cellular process BP
GO:0009994 oocyte differentiation BP
GO:0010256 endomembrane system organization BP
GO:0010467 gene expression BP
GO:0010564 regulation of cell cycle process BP
GO:0010941 regulation of cell death BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0015931 nucleobase-containing compound transport BP
GO:0016020 membrane CC
GO:0016032 viral process BP
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016482 cytosolic transport BP
GO:0017038 protein import BP
GO:0017056 structural constituent of nuclear pore MF
GO:0019953 sexual reproduction BP
GO:0022402 cell cycle process BP
GO:0022412 cellular process involved in reproduction in multicellular organism BP
GO:0022414 reproductive process BP
GO:0022607 cellular component assembly BP
GO:0023052 signaling BP
GO:0030029 actin filament-based process BP
GO:0030036 actin cytoskeleton organization BP
GO:0030048 actin filament-based movement BP
GO:0030054 cell junction CC
GO:0030154 cell differentiation BP
GO:0030715 oocyte growth in germarium-derived egg chamber BP
GO:0030717 oocyte karyosome formation BP
GO:0031090 organelle membrane CC
GO:0031503 protein-containing complex localization BP
GO:0031965 nuclear membrane CC
GO:0031967 organelle envelope CC
GO:0031974 membrane-enclosed lumen CC
GO:0031975 envelope CC
GO:0031981 nuclear lumen CC
GO:0032386 regulation of intracellular transport BP
GO:0032388 positive regulation of intracellular transport BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033043 regulation of organelle organization BP
GO:0033157 regulation of intracellular protein transport BP
GO:0033365 protein localization to organelle BP
GO:0034399 nuclear periphery CC
GO:0034504 protein localization to nucleus BP
GO:0034613 protein localization BP
GO:0035220 wing disc development BP
GO:0035295 tube development BP
GO:0035637 obsolete multicellular organismal signaling BP
GO:0036228 protein localization to nuclear inner membrane BP
GO:0040007 growth BP
GO:0042127 regulation of cell population proliferation BP
GO:0042306 regulation of protein import into nucleus BP
GO:0042307 positive regulation of protein import into nucleus BP
GO:0042391 regulation of membrane potential BP
GO:0042886 amide transport BP
GO:0042981 regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043902 obsolete positive regulation of multi-organism process BP
GO:0044057 regulation of system process BP
GO:0044085 cellular component biogenesis BP
GO:0044403 biological process involved in symbiotic interaction BP
GO:0044419 biological process involved in interspecies interaction between organisms BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044611 nuclear pore inner ring CC
GO:0044703 multi-organism reproductive process BP
GO:0045184 establishment of protein localization BP
GO:0045477 regulation of nurse cell apoptotic process BP
GO:0045595 regulation of cell differentiation BP
GO:0046822 regulation of nucleocytoplasmic transport BP
GO:0046824 positive regulation of nucleocytoplasmic transport BP
GO:0046907 intracellular transport BP
GO:0048232 male gamete generation BP
GO:0048285 organelle fission BP
GO:0048468 cell development BP
GO:0048477 oogenesis BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048588 developmental cell growth BP
GO:0048589 developmental growth BP
GO:0048599 oocyte development BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050657 nucleic acid transport BP
GO:0050658 RNA transport BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051028 mRNA transport BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051128 regulation of cellular component organization BP
GO:0051168 nuclear export BP
GO:0051169 nuclear transport BP
GO:0051170 import into nucleus BP
GO:0051179 localization BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051225 spindle assembly BP
GO:0051234 establishment of localization BP
GO:0051236 establishment of RNA localization BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051276 chromosome organization BP
GO:0051321 meiotic cell cycle BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051704 obsolete multi-organism process BP
GO:0051726 regulation of cell cycle BP
GO:0051783 regulation of nuclear division BP
GO:0055044 symplast CC
GO:0055049 astral spindle assembly BP
GO:0055050 astral spindle assembly involved in male meiosis BP
GO:0060047 heart contraction BP
GO:0060048 cardiac muscle contraction BP
GO:0060284 regulation of cell development BP
GO:0060341 regulation of cellular localization BP
GO:0060429 epithelium development BP
GO:0061024 membrane organization BP
GO:0061337 cardiac conduction BP
GO:0061982 meiosis I cell cycle process BP
GO:0061988 karyosome formation BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070013 intracellular organelle lumen CC
GO:0070192 chromosome organization involved in meiotic cell cycle BP
GO:0070201 regulation of establishment of protein localization BP
GO:0070252 actin-mediated cell contraction BP
GO:0070727 cellular macromolecule localization BP
GO:0070925 organelle assembly BP
GO:0071166 ribonucleoprotein complex localization BP
GO:0071426 obsolete ribonucleoprotein complex export from nucleus BP
GO:0071427 obsolete mRNA-containing ribonucleoprotein complex export from nucleus BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0072594 establishment of protein localization to organelle BP
GO:0072657 protein localization to membrane BP
GO:0086001 cardiac muscle cell action potential BP
GO:0086002 cardiac muscle cell action potential involved in contraction BP
GO:0086003 cardiac muscle cell contraction BP
GO:0086014 atrial cardiac muscle cell action potential BP
GO:0086019 cell-cell signaling involved in cardiac conduction BP
GO:0086026 atrial cardiac muscle cell to AV node cell signaling BP
GO:0086065 cell communication involved in cardiac conduction BP
GO:0086066 atrial cardiac muscle cell to AV node cell communication BP
GO:0090087 regulation of peptide transport BP
GO:0090306 meiotic spindle assembly BP
GO:0090316 positive regulation of intracellular protein transport BP
GO:0090435 protein localization to nuclear envelope BP
GO:0097435 supramolecular fiber organization BP
GO:0140013 meiotic nuclear division BP
GO:1900180 regulation of protein localization to nucleus BP
GO:1900182 positive regulation of protein localization to nucleus BP
GO:1901987 regulation of cell cycle phase transition BP
GO:1901990 regulation of mitotic cell cycle phase transition BP
GO:1903046 meiotic cell cycle process BP
GO:1903522 regulation of blood circulation BP
GO:1903827 regulation of protein localization BP
GO:1903829 positive regulation of protein localization BP
GO:1904589 regulation of protein import BP
GO:1904591 positive regulation of protein import BP
GO:1904748 regulation of apoptotic process involved in development BP
GO:1904951 positive regulation of establishment of protein localization BP
GO:1905475 regulation of protein localization to membrane BP
GO:1905879 regulation of oogenesis BP
GO:1905936 regulation of germ cell proliferation BP
GO:1905938 positive regulation of germ cell proliferation BP
GO:2000241 regulation of reproductive process BP
GO:2000243 positive regulation of reproductive process BP
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.