Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC107409630
View in Genome Browser
Position
NC_063288.1:548926-550631 (+)
1705bp
Gene Type
gene
Gene Description (Protein Product)
Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips; a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity)
Organism
Ziziphus jujuba
Also AS AT2G27370

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125421718 Belongs to the Casparian strip membrane proteins (CASP) family
gene-LOC107428951 Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips; a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion
gene-LOC107412766 transcription factor
Regulatory gene
gene-LOC107405089 Protein BASIC PENTACYSTEINE2-like
gene-LOC107405648 BEL1-like homeodomain protein
gene-LOC107405822 homeobox protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0007043 cell-cell junction assembly BP
GO:0008150 biological_process BP
GO:0009505 plant-type cell wall CC
GO:0009531 secondary cell wall CC
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0022607 cellular component assembly BP
GO:0030312 external encapsulating structure CC
GO:0034329 cell junction assembly BP
GO:0034330 cell junction organization BP
GO:0042545 cell wall modification BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0044085 cellular component biogenesis BP
GO:0044426 obsolete cell wall part CC
GO:0044462 obsolete external encapsulating structure part CC
GO:0044464 obsolete cell part CC
GO:0045216 cell-cell junction organization BP
GO:0045229 external encapsulating structure organization BP
GO:0046983 protein dimerization activity MF
GO:0048037 obsolete cofactor binding MF
GO:0048226 Casparian strip CC
GO:0051536 iron-sulfur cluster binding MF
GO:0051540 metal cluster binding MF
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC