PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC107432501 View in Genome Browser
Position	NC_063298.1:11536408-11561438 (-) 25030bp
Gene Type	gene
Gene Description (Protein Product)	Ras-related protein
Organism	Ziziphus jujuba
Also AS	AT1G16920

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC125423698 Golgi membrane protein involved in vesicular trafficking

gene-LOC107433328 Belongs to the small GTPase superfamily. Arf family

gene-LOC107435697 Brefeldin A-inhibited guanine nucleotide-exchange protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0001882	nucleoside binding	MF
GO:0001883	purine nucleoside binding	MF
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005525	GTP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005768	endosome	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005886	plasma membrane	CC
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0006972	hyperosmotic response	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009651	response to salt stress	BP
GO:0012505	endomembrane system	CC
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0016020	membrane	CC
GO:0017076	purine nucleotide binding	MF
GO:0019001	guanyl nucleotide binding	MF
GO:0031090	organelle membrane	CC
GO:0031410	cytoplasmic vesicle	CC
GO:0031982	vesicle	CC
GO:0032549	ribonucleoside binding	MF
GO:0032550	purine ribonucleoside binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032561	guanyl ribonucleotide binding	MF
GO:0032879	regulation of localization	BP
GO:0033036	macromolecule localization	BP
GO:0034613	protein localization	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0042538	hyperosmotic salinity response	BP
GO:0042886	amide transport	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051049	regulation of transport	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0060627	regulation of vesicle-mediated transport	BP
GO:0065007	biological regulation	BP
GO:0070727	cellular macromolecule localization	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0071944	cell periphery	CC
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0097708	intracellular vesicle	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.