Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC107433000
View in Genome Browser
Position
NC_063298.1:19083908-19088481 (-)
4573bp
Gene Type
gene
Gene Description (Protein Product)
xylogalacturonan metabolic process
Organism
Ziziphus jujuba
Also AS AT3G45400

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC112490467 Involved in nucleolar processing of pre-18S ribosomal RNA
gene-LOC107435920 Metacaspase-1-like
gene-LOC112490409 AMP deaminase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0000271 polysaccharide biosynthetic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0005975 carbohydrate metabolic process BP
GO:0005976 polysaccharide metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008194 UDP-glycosyltransferase activity MF
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009987 cellular process BP
GO:0010393 galacturonan metabolic process BP
GO:0010398 xylogalacturonan metabolic process BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016051 carbohydrate biosynthetic process BP
GO:0016740 transferase activity MF
GO:0016757 glycosyltransferase activity MF
GO:0016763 pentosyltransferase activity MF
GO:0017144 xenobiotic metabolic process BP
GO:0031090 organelle membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0035252 UDP-xylosyltransferase activity MF
GO:0042285 xylosyltransferase activity MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045488 pectin metabolic process BP
GO:0045489 pectin biosynthetic process BP
GO:0071704 organic substance metabolic process BP
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098791 Golgi apparatus subcompartment CC
GO:1901576 organic substance biosynthetic process BP