Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC125418593
View in Genome Browser
Position
NC_063296.1:6824809-6828312 (+)
3503bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the spermidine spermine synthase family
Organism
Ziziphus jujuba
Also AS AT1G23820

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125424362 5'-methylthioadenosine S-adenosylhomocysteine nucleosidase
gene-LOC125418593 Belongs to the spermidine spermine synthase family
gene-LOC125419832 Mevalonate

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004766 spermidine synthase activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0006576 biogenic amine metabolic process BP
GO:0006595 polyamine metabolic process BP
GO:0006596 polyamine biosynthetic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008216 spermidine metabolic process BP
GO:0008295 spermidine biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009308 amine metabolic process BP
GO:0009309 amine biosynthetic process BP
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016740 transferase activity MF
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042401 biogenic amine biosynthetic process BP
GO:0044106 amine metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044464 obsolete cell part CC
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0097164 ammonium ion metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00480 Glutathione metabolism -
map00330 Arginine and proline metabolism -
map00270 Cysteine and methionine metabolism Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].