PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC125419626 View in Genome Browser
Position	NC_063298.1:10297485-10299729 (+) 2244bp
Gene Type	gene
Gene Description (Protein Product)	ABC transporter G family member
Organism	Ziziphus jujuba
Also AS	AT4G27420

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC125419626 ABC transporter G family member

gene-LOC125421430 Serine threonine-protein kinase-like protein

gene-LOC125420332 RING-type E3 ubiquitin transferase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003002	regionalization	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005215	transporter activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0006810	transport	BP
GO:0007275	multicellular organism development	BP
GO:0007389	pattern specification process	BP
GO:0008150	biological_process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009965	leaf morphogenesis	BP
GO:0010016	shoot system morphogenesis	BP
GO:0010051	xylem and phloem pattern formation	BP
GO:0010154	fruit development	BP
GO:0010222	stem vascular tissue pattern formation	BP
GO:0010588	cotyledon vascular tissue pattern formation	BP
GO:0015399	primary active transmembrane transporter activity	MF
GO:0015405	ATPase-coupled transmembrane transporter activity	MF
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0022414	reproductive process	BP
GO:0022804	active transmembrane transporter activity	MF
GO:0022857	transmembrane transporter activity	MF
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0042623	ATP hydrolysis activity	MF
GO:0042626	ATPase-coupled transmembrane transporter activity	MF
GO:0042802	identical protein binding	MF
GO:0042803	protein homodimerization activity	MF
GO:0043492	ATPase-coupled transmembrane transporter activity	MF
GO:0044425	obsolete membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0046983	protein dimerization activity	MF
GO:0048316	seed development	BP
GO:0048366	leaf development	BP
GO:0048367	shoot system development	BP
GO:0048598	embryonic morphogenesis	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048825	cotyledon development	BP
GO:0048826	cotyledon morphogenesis	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0055085	transmembrane transport	BP
GO:0061458	reproductive system development	BP
GO:0071944	cell periphery	CC
GO:0090698	post-embryonic plant morphogenesis	BP
GO:0099402	plant organ development	BP
GO:1905392	plant organ morphogenesis	BP

KEGG Term	Name	Description
map02010	ABC transporters	The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).