PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC125423401 View in Genome Browser
Position	NC_063293.1:20063263-20079566 (-) 16303bp
Gene Type	gene
Gene Description (Protein Product)	DNA mismatch repair protein
Organism	Ziziphus jujuba
Also AS	AT3G24320

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC125423478 Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER); the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond; leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines

gene-LOC125424363 Small RNA

gene-LOC125423881 NPR1/NIM1 like defence protein C terminal

Regulatory gene

gene-LOC107403899 dof zinc finger protein

gene-LOC107404240 Dof zinc finger protein

gene-LOC107405930 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000002	mitochondrial genome maintenance	BP
GO:0000217	DNA secondary structure binding	MF
GO:0000404	heteroduplex DNA loop binding	MF
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003684	damaged DNA binding	MF
GO:0003690	double-stranded DNA binding	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006281	DNA repair	BP
GO:0006298	mismatch repair	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0006996	organelle organization	BP
GO:0007005	mitochondrion organization	BP
GO:0008094	ATP-dependent activity, acting on DNA	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009408	response to heat	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009579	thylakoid	CC
GO:0009628	response to abiotic stimulus	BP
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0030983	mismatched DNA binding	MF
GO:0032042	mitochondrial DNA metabolic process	BP
GO:0032135	DNA insertion or deletion binding	MF
GO:0032300	mismatch repair complex	CC
GO:0032991	protein-containing complex	CC
GO:0033554	cellular response to stress	BP
GO:0034357	photosynthetic membrane	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042623	ATP hydrolysis activity	MF
GO:0042651	thylakoid membrane	CC
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043570	maintenance of DNA repeat elements	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044436	obsolete thylakoid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0050896	response to stimulus	BP
GO:0051276	chromosome organization	BP
GO:0051716	cellular response to stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1990391	DNA repair complex	CC