Linum usitatissimum - Plant Editosome Database - BIG Data Center

Summary

Species: Linum usitatissimum
NCBI Taxonomy: 4006
Organelle:Chloroplast (NC_036356.1)
Edited Genes:18
Editing Events:53
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
accD252808
53250
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
CCU=>UCU
GCC=>GUC
P=>S
A=>V
atpB148849CDS-mRNAC-to-UCCC=>UCCP=>S
ccsA1117024CDS+mRNAC-to-UACA=>AUAT=>I
clpP264690
64424
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCG=>UUG
CUU=>UUU
S=>L
L=>F
matK6NA
NA
NA
NA
NA
NA
CDS
CDS
CDS
CDS
CDS
CDS
NA
NA
NA
NA
NA
NA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
CUU=>UUU
GCU=>GUU
UCA=>UUA
CUU=>UUU
UCA=>UUA
L=>F
L=>F
A=>V
S=>L
L=>F
S=>L
ndhA4121563
121714
122070
122295
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCC=>UUC
CUU=>UUU
UCG=>UUG
UCA=>UUA
S=>F
L=>F
S=>L
S=>L
ndhB9141716
142153
142178
142304
142313
142397
142403
142822
143048
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CAU=>UAU
UCG=>UUG
CCA=>CUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
CAU=>UAU
CCA=>CUA
S=>L
H=>Y
S=>L
P=>L
S=>F
S=>L
S=>L
H=>Y
P=>L
ndhD8117462
117791
117980
117989
118268
118322
118800
118865
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUC=>UUC
GCU=>GUU
CCC=>CUC
UCA=>UUA
UCA=>UUA
GCU=>GUU
CUU=>UUU
ACG=>AUG
L=>F
A=>V
P=>L
S=>L
S=>L
A=>V
L=>F
T=>M
ndhG4120505
120380
120232
120133
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
CAC=>UAC
ACA=>AUA
ACA=>AUA
S=>F
H=>Y
T=>I
T=>I
petB169505CDS+mRNAC-to-UCCA=>CUAP=>L
psaI154388CDS+mRNAC-to-UUCU=>UUUS=>F
rpl2177998CDS-mRNAC-to-UGCG=>GUGA=>V
rpl20363026
63098
63131
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
GCU=>GUU
UCU=>UUU
ACA=>AUA
A=>V
S=>F
T=>I
rpoA271427
71370
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UCG=>UUG
S=>L
S=>L
rpoC1116894CDS-mRNAC-to-UUCG=>UUGS=>L
rpoC2514674
13106
12392
11521
10687
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
GCC=>GUC
CUU=>UUU
CGG=>UGG
UCU=>UUU
UCC=>UUC
A=>V
L=>F
R=>W
S=>F
S=>F
rps14131744CDS-mRNAC-to-UCCC=>CUCP=>L
rps2110044CDS-mRNAC-to-UUCA=>UUAS=>L

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)