clpP - Plant Editosome Database - BIG Data Center

Summary

Gene: clpP
Function: Clp protease
Species: 30
Editing Factors:15 (CLB19, DYW2, HEMC, ISE2, MEF37, MORF2, MORF9, NUWA, ORRM1, ORRM1,ORRM6, ORRM6, OTP90, OZ1, PGN, YL)
Editing Types:
C-to-U (45)
U-to-C (3)
Editing Events: 91 (C-to-U: 45   NA: 43   U-to-C: 3)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Acnistus arborescens x Iochroma cyaneumChloroplast2
NA: 2
73037-73264
73900-74190
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Adiantum capillus-venerisChloroplast3
NA: 3
65309-65548
66202-66493
67225-67295
CDS
CDS
CDS
-NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast17
C-to-U: 11
NA: 3
U-to-C: 3
88804-89055
88850
88853
88901
88976
89640-89931
89686
89688
89689
89690
89725
89797
89810
89894
89903
90583-90653
90596
NA
NA
CDS
NA
NA
NA
NA
NA
CDS
NA
NA
NA
NA
NA
CDS
NA
NA
+
-
C-to-U
C-to-U
NA
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
NA
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
NA
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Apopellia endiviifoliaChloroplast3
C-to-U: 3
68400
69044
69283
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
CUC=>CUU
UCU=>UUU
UCA=>UUA
L=>L
S=>F
S=>L
Arabidopsis lyrata subsp. lyrata MN47Chloroplast1
C-to-U: 1
70238NA+C-to-UNA=>NANA=>NA
Arabidopsis thalianaChloroplast2
C-to-U: 2
69942CDS
CDS
-C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
Callitropsis nootkatensisPlastid1
NA: 1
29153-29743CDS+NANA=>NANA=>NA
Callitropsis vietnamensisPlastid1
NA: 1
29147-29737CDS+NANA=>NANA=>NA
Cocos nuciferaChloroplast4
C-to-U: 4
69660
70137
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
H=>Y
H=>Y
Cupressus sempervirensPlastid1
NA: 1
29850-30389CDS+NANA=>NANA=>NA
Cypripedium macranthosChloroplast1
C-to-U: 1
71251CDS-C-to-UCAU=>UAUH=>Y
Dendrobium officinaleChloroplast2
C-to-U: 2
70084
70561
CDS
CDS
-C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
Diplazium dushanenseChloroplast4
C-to-U: 1
NA: 3
66074-66313
66076
66915-67206
67923-67993
CDS
CDS
CDS
NA
-
+
NA
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast4
C-to-U: 1
NA: 3
66072-66311
66074
66896-67187
67906-67976
CDS
CDS
NA
CDS
-
+
NA
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast3
NA: 3
83345-83596
84138-84428
85160-85228
NA
NA
NA
-NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Elaeis guineensisChloroplast2
C-to-U: 2
70932
72060
CDS
CDS
NAC-to-U
C-to-U
UCA=>UUA
CAU=>UAU
S=>L
H=>Y
Hesperocyparis glabraPlastid1
NA: 1
28915-29505CDS+NANA=>NANA=>NA
Hevea brasiliensisChloroplast1
C-to-U: 1
74527CDS-C-to-UCAU=>UAUH=>Y
Jenufa minutaChloroplast1
NA: 1
129305-130885CDS-NANA=>NANA=>NA
Juniperus bermudianaChloroplast1
NA: 1
29309-29905CDS+NANA=>NANA=>NA
Juniperus monospermaChloroplast1
NA: 1
29252-29848CDS+NANA=>NANA=>NA
Juniperus scopulorumChloroplast1
NA: 1
29146-29742CDS+NANA=>NANA=>NA
Juniperus virginianaChloroplast1
NA: 1
29262-29858CDS+NANA=>NANA=>NA
Linum usitatissimumChloroplast2
C-to-U: 2
64424
64690
CDS
CDS
-C-to-U
C-to-U
UCG=>UUG
CUU=>UUU
S=>L
L=>F
Lonicera japonicaChloroplast1
NA: 1
74087-74677CDS-NANA=>NANA=>NA
Nothoceros aenigmaticusPlastid8
NA: 8
90486-90737
90486-92334
91306-91597
92264-92334
NA
Exon
Exon
Exon
NA
Exon
Exon
Exon
-NA
NA
NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pelargonium alternansChloroplast1
C-to-U: 1
83171CDS-C-to-UCUU=>UUUL=>F
Phalaenopsis equestrisChloroplast2
C-to-U: 2
71113
71590
CDS
CDS
-C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
Silene latifoliaChloroplast1
C-to-U: 1
68834CDS-C-to-UCAU=>UAUH=>Y
Silene vulgarisChloroplast2
C-to-U: 2
68367CDS
CDS
-C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)