Nicotiana tomentosiformis - Plant Editosome Database - BIG Data Center

Summary

Species: Nicotiana tomentosiformis
NCBI Taxonomy: 4098
Organelle:Chloroplast (NC_007602.1)
Editing Factors:1 (CRR4)
Edited Genes:16
Editing Events:33
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpA111301CDS-mRNAC-to-UCCC=>CUCP=>L
atpF112609CDS-mRNAC-to-UCCA=>CUAP=>L
ndhA3122212
121987
121480
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCC=>UUC
S=>L
S=>L
S=>F
ndhB8142405
142723
142842
142867
142993
143002
143086
143737
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
CAU=>UAU
UCA=>UUA
CCA=>CUA
UCU=>UUU
UCA=>UUA
CCA=>CUA
S=>L
P=>L
H=>Y
S=>L
P=>L
S=>F
S=>L
P=>L
ndhD4118110
118185
118401
118782
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
UCA=>UUA
ACG=>AUG
S=>L
S=>L
S=>L
T=>M
ndhF1113787CDS-mRNAC-to-UUCA=>UUAS=>L
petB178579CDS+mRNAC-to-UCCA=>CUAP=>L
psbE166790CDS-mRNAC-to-UCCA=>UCAP=>S
psbL166599CDS-mRNAC-to-UACG=>AUGT=>M
rpl20170926CDS-mRNAC-to-UUCA=>UUAS=>L
rpoA180394CDS-mRNAC-to-UUCA=>UUAS=>L
rpoB425439
27101
26966
26888
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCU=>UUU
UCA=>UUA
UCA=>UUA
S=>F
S=>F
S=>L
S=>L
rpoC1123429CDS-mRNAC-to-UUCA=>UUAS=>L
rpoC2117544CDS-mRNAC-to-UUCA=>UUAS=>L
rps14238733
38664
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
S=>L
P=>L
rps2216764
16650
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
ACA=>AUA
UCA=>UUA
T=>I
S=>L

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)