Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G13G089663
View in Genome Browser
Position
chrG13:10629414-10631266 (+)
1852bp
Gene Type
gene
Gene Description (Protein Product)
Ammonium transporter
Organism
Populus alba x Populus glandulosa
Also AS Potri.019G023600AT1G64780Potri.019G023600.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G13G089663 Ammonium transporter
Pop_G19G009336 Ammonium transporter
Pop_G19G009749 Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Regulatory gene
Pop_A01G004199 GAGA binding protein-like family
Pop_A02G005181 Protein BASIC PENTACYSTEINE6-like
Pop_A04G028302 Protein BASIC PENTACYSTEINE4-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006812 monoatomic cation transport BP
GO:0008150 biological_process BP
GO:0008324 monoatomic cation transmembrane transporter activity MF
GO:0008519 ammonium transmembrane transporter activity MF
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009624 response to nematode BP
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015695 organic cation transport BP
GO:0015696 ammonium transmembrane transport BP
GO:0015837 amine transport BP
GO:0015843 methylammonium transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0019755 one-carbon compound transport BP
GO:0022857 transmembrane transporter activity MF
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0034220 monoatomic ion transmembrane transport BP
GO:0043207 response to external biotic stimulus BP
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0055085 transmembrane transport BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071944 cell periphery CC
GO:0072488 ammonium transmembrane transport BP
GO:0098655 monoatomic cation transmembrane transport BP
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.