Basic Information
Gene ID
JmaChr13G11786.g
Position
chr13:21106652-21108478 (-)
1826bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor U2af small subunit
Organism
Also AS AT5G42820

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JmaChr15G10710.g U2 snRNP auxiliary factor large subunit
JmaChr13G11786.g Splicing factor U2af small subunit
JmaChr16G10434.g Splicing factor 3B subunit
Regulatory gene
JmaChr01G10033.g dof zinc finger protein
JmaChr01G10193.g Transcription factor
JmaChr01G10745.g Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.