Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PH02Gene38326
View in Genome Browser
Position
hic_scaffold_24:14286239-14321164 (+)
34925bp
Gene Type
gene
Gene Description (Protein Product)
Vps54-like protein
Organism
Phyllostachys edulis
Also AS AT4G19490

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene45022 Vps52 / Sac2 family
PH02Gene41924 Vps53-like, N-terminal
PH02Gene42735 Belongs to the adaptor complexes medium subunit family
Regulatory gene
PH02Gene00185 GAGA binding protein-like family
PH02Gene00239 zinc finger
PH02Gene00552 Zinc-finger double-stranded RNA-binding

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0000149 SNARE binding MF
GO:0000938 GARP complex CC
GO:0001894 tissue homeostasis BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0006810 transport BP
GO:0006892 post-Golgi vesicle-mediated transport BP
GO:0006896 Golgi to vacuole transport BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007034 vacuolar transport BP
GO:0007041 lysosomal transport BP
GO:0008150 biological_process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016197 endosomal transport BP
GO:0016482 cytosolic transport BP
GO:0019905 syntaxin binding MF
GO:0031090 organelle membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032501 multicellular organismal process BP
GO:0032588 trans-Golgi network membrane CC
GO:0032991 protein-containing complex CC
GO:0040008 regulation of growth BP
GO:0042147 retrograde transport, endosome to Golgi BP
GO:0042592 homeostatic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045103 intermediate filament-based process BP
GO:0045104 intermediate filament cytoskeleton organization BP
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048471 perinuclear region of cytoplasm CC
GO:0048871 multicellular organismal-level homeostasis BP
GO:0048872 homeostasis of number of cells BP
GO:0048873 homeostasis of number of cells within a tissue BP
GO:0050789 regulation of biological process BP
GO:0050879 multicellular organismal movement BP
GO:0050881 musculoskeletal movement BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060052 neurofilament cytoskeleton organization BP
GO:0060249 anatomical structure homeostasis BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070013 intracellular organelle lumen CC
GO:0071840 cellular component organization or biogenesis BP
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098791 Golgi apparatus subcompartment CC
GO:0099023 vesicle tethering complex CC