Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs012804g30132
View in Genome Browser
Position
Potrs012804:7907-14436 (-)
6529bp
Gene Type
gene
Gene Description (Protein Product)
Transcription initiation factor IIA large
Organism
Populus tremuloides
Also AS Potri.001G244204AT1G07470AT1G07480Potri.001G244204.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs013745g30022 transcription initiation from RNA polymerase II promoter
Potrs019848g35563 transcription initiation from RNA polymerase II promoter
Potrs019886g22510 DNA repair helicase
Regulatory gene
Potrs000130g30685 PHD zinc finger
Potrs000182g00239 WRKY transcription factor
Potrs000238g00518 WRKY transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0000976 transcription cis-regulatory region binding MF
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding MF
GO:0001012 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001046 core promoter sequence-specific DNA binding MF
GO:0001047 core promoter sequence-specific DNA binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005667 transcription regulator complex CC
GO:0005672 transcription factor TFIIA complex CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006351 DNA-templated transcription BP
GO:0006352 DNA-templated transcription initiation BP
GO:0006366 transcription by RNA polymerase II BP
GO:0006367 transcription initiation at RNA polymerase II promoter BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016591 RNA polymerase II, holoenzyme CC
GO:0017025 TBP-class protein binding MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0022607 cellular component assembly BP
GO:0030880 RNA polymerase complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043565 sequence-specific DNA binding MF
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0044798 transcription regulator complex CC
GO:0046483 heterocycle metabolic process BP
GO:0051123 RNA polymerase II preinitiation complex assembly BP
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0070013 intracellular organelle lumen CC
GO:0070897 transcription preinitiation complex assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0090575 RNA polymerase II transcription regulator complex CC
GO:0097159 organic cyclic compound binding MF
GO:0097659 nucleic acid-templated transcription BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC
GO:1990837 sequence-specific double-stranded DNA binding MF
KEGG Term Name Description
map03022 Basal transcription factors -