Basic Information
Gene ID
Potrs042706g26886
Position
Potrs042706:14010-16697 (-)
2687bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor U2af small subunit
Organism
Also AS Potri.004G188900AT5G42820Potri.004G188900.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs042706g26886 Splicing factor U2af small subunit
Potrs148414g27386 Small nuclear ribonucleoprotein
Potrs043103g28255 THO complex subunit
Regulatory gene
Potrs000182g00239 WRKY transcription factor
Potrs000221g00273 Zinc-finger homeodomain protein
Potrs000238g00518 WRKY transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.