Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_45223.g
Position
jcf7190000074041:9865-10793 (-)
928bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the protein kinase superfamily
Organism
Pseudotsuga menziesii
Also AS AT3G48750

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_46438.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
PSME_50033.g Belongs to the protein kinase superfamily
PSME_45223.g Belongs to the protein kinase superfamily
Regulatory gene
PSME_01715.g transcription factor
PSME_03176.g C2HE / C2H2 / C2HC zinc-binding finger
PSME_03762.g transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000075 cell cycle checkpoint signaling BP
GO:0000077 DNA damage checkpoint signaling BP
GO:0000082 G1/S transition of mitotic cell cycle BP
GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle BP
GO:0000086 G2/M transition of mitotic cell cycle BP
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000226 microtubule cytoskeleton organization BP
GO:0000278 mitotic cell cycle BP
GO:0000302 response to reactive oxygen species BP
GO:0000307 cyclin-dependent protein kinase holoenzyme complex CC
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004672 protein kinase activity MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0004693 cyclin-dependent protein serine/threonine kinase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005813 centrosome CC
GO:0005815 microtubule organizing center CC
GO:0005829 cytosol CC
GO:0005856 cytoskeleton CC
GO:0005979 regulation of glycogen biosynthetic process BP
GO:0006109 regulation of carbohydrate metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006260 DNA replication BP
GO:0006325 chromatin organization BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest BP
GO:0006979 response to oxidative stress BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007017 microtubule-based process BP
GO:0007049 cell cycle BP
GO:0007089 traversing start control point of mitotic cell cycle BP
GO:0007093 mitotic cell cycle checkpoint signaling BP
GO:0007098 centrosome cycle BP
GO:0007099 centriole replication BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007264 small GTPase mediated signal transduction BP
GO:0007265 Ras protein signal transduction BP
GO:0007275 multicellular organism development BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008284 positive regulation of cell population proliferation BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009895 negative regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010389 regulation of G2/M transition of mitotic cell cycle BP
GO:0010468 regulation of gene expression BP
GO:0010506 regulation of autophagy BP
GO:0010507 negative regulation of autophagy BP
GO:0010508 positive regulation of autophagy BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010562 positive regulation of phosphorus metabolic process BP
GO:0010563 negative regulation of phosphorus metabolic process BP
GO:0010564 regulation of cell cycle process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0010675 regulation of cellular carbohydrate metabolic process BP
GO:0010677 negative regulation of cellular carbohydrate metabolic process BP
GO:0010906 regulation of glucose metabolic process BP
GO:0010948 negative regulation of cell cycle process BP
GO:0010962 regulation of glucan biosynthetic process BP
GO:0012505 endomembrane system CC
GO:0015030 Cajal body CC
GO:0015630 microtubule cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0016239 positive regulation of macroautophagy BP
GO:0016241 regulation of macroautophagy BP
GO:0016242 negative regulation of macroautophagy BP
GO:0016301 kinase activity MF
GO:0016310 phosphorylation BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016572 obsolete histone phosphorylation BP
GO:0016604 nuclear body CC
GO:0016740 transferase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0018105 peptidyl-serine phosphorylation BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018209 peptidyl-serine modification BP
GO:0019216 regulation of lipid metabolic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019904 protein domain specific binding MF
GO:0022402 cell cycle process BP
GO:0022414 reproductive process BP
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023052 signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030330 DNA damage response, signal transduction by p53 class mediator BP
GO:0030332 cyclin binding MF
GO:0031023 microtubule organizing center organization BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031330 negative regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031505 fungal-type cell wall organization BP
GO:0031570 DNA integrity checkpoint signaling BP
GO:0031571 mitotic G1 DNA damage checkpoint signaling BP
GO:0031647 regulation of protein stability BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0031982 vesicle CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032878 regulation of establishment or maintenance of cell polarity BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032881 regulation of polysaccharide metabolic process BP
GO:0032885 regulation of polysaccharide biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0033554 cellular response to stress BP
GO:0034599 cellular response to oxidative stress BP
GO:0034614 cellular response to reactive oxygen species BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0035556 intracellular signal transduction BP
GO:0035690 cellular response to xenobiotic stimulus BP
GO:0036211 protein modification process BP
GO:0042127 regulation of cell population proliferation BP
GO:0042221 response to chemical BP
GO:0042493 response to xenobiotic stimulus BP
GO:0042763 intracellular immature spore CC
GO:0042764 ascospore-type prospore CC
GO:0042770 signal transduction in response to DNA damage BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043255 regulation of carbohydrate biosynthetic process BP
GO:0043412 macromolecule modification BP
GO:0043433 negative regulation of DNA-binding transcription factor activity BP
GO:0043467 regulation of generation of precursor metabolites and energy BP
GO:0044085 cellular component biogenesis BP
GO:0044092 negative regulation of molecular function BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0044770 cell cycle phase transition BP
GO:0044772 mitotic cell cycle phase transition BP
GO:0044773 mitotic DNA damage checkpoint signaling BP
GO:0044774 mitotic DNA integrity checkpoint signaling BP
GO:0044783 mitotic G1 DNA damage checkpoint signaling BP
GO:0044819 mitotic G1/S transition checkpoint signaling BP
GO:0044839 cell cycle G2/M phase transition BP
GO:0044843 cell cycle G1/S phase transition BP
GO:0045229 external encapsulating structure organization BP
GO:0045719 negative regulation of glycogen biosynthetic process BP
GO:0045786 negative regulation of cell cycle BP
GO:0045787 positive regulation of cell cycle BP
GO:0045834 positive regulation of lipid metabolic process BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045912 negative regulation of carbohydrate metabolic process BP
GO:0045930 negative regulation of mitotic cell cycle BP
GO:0045931 positive regulation of mitotic cell cycle BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0045936 negative regulation of phosphate metabolic process BP
GO:0045937 positive regulation of phosphate metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046889 positive regulation of lipid biosynthetic process BP
GO:0046890 regulation of lipid biosynthetic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050848 regulation of calcium-mediated signaling BP
GO:0050849 negative regulation of calcium-mediated signaling BP
GO:0050896 response to stimulus BP
GO:0051090 regulation of DNA-binding transcription factor activity BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051298 centrosome duplication BP
GO:0051321 meiotic cell cycle BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060968 obsolete regulation of gene silencing BP
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0062012 regulation of small molecule metabolic process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070873 regulation of glycogen metabolic process BP
GO:0070874 negative regulation of glycogen metabolic process BP
GO:0070887 cellular response to chemical stimulus BP
GO:0070925 organelle assembly BP
GO:0071071 regulation of phospholipid biosynthetic process BP
GO:0071073 positive regulation of phospholipid biosynthetic process BP
GO:0071156 regulation of cell cycle BP
GO:0071158 regulation of cell cycle BP
GO:0071241 cellular response to inorganic substance BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071704 organic substance metabolic process BP
GO:0071731 response to nitric oxide BP
GO:0071732 cellular response to nitric oxide BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071852 fungal-type cell wall organization or biogenesis BP
GO:0072331 signal transduction by p53 class mediator BP
GO:0072395 cell cycle checkpoint signaling BP
GO:0072401 DNA integrity checkpoint signaling BP
GO:0072413 mitotic cell cycle checkpoint signaling BP
GO:0072422 DNA damage checkpoint signaling BP
GO:0072431 mitotic G1 DNA damage checkpoint signaling BP
GO:0080090 regulation of primary metabolic process BP
GO:0090068 positive regulation of cell cycle process BP
GO:0090304 nucleic acid metabolic process BP
GO:0097124 cyclin A2-CDK2 complex CC
GO:0097366 response to bronchodilator BP
GO:0097472 cyclin-dependent protein kinase activity MF
GO:0097708 intracellular vesicle CC
GO:0098534 centriole assembly BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1900087 positive regulation of G1/S transition of mitotic cell cycle BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901698 response to nitrogen compound BP
GO:1901699 cellular response to nitrogen compound BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1901796 regulation of signal transduction by p53 class mediator BP
GO:1901987 regulation of cell cycle phase transition BP
GO:1901988 negative regulation of cell cycle phase transition BP
GO:1901989 positive regulation of cell cycle phase transition BP
GO:1901990 regulation of mitotic cell cycle phase transition BP
GO:1901991 negative regulation of mitotic cell cycle phase transition BP
GO:1901992 positive regulation of mitotic cell cycle phase transition BP
GO:1902170 cellular response to reactive nitrogen species BP
GO:1902400 mitotic G1 DNA damage checkpoint signaling BP
GO:1902402 mitotic DNA damage checkpoint signaling BP
GO:1902403 mitotic DNA integrity checkpoint signaling BP
GO:1902494 catalytic complex CC
GO:1902531 regulation of intracellular signal transduction BP
GO:1902532 negative regulation of intracellular signal transduction BP
GO:1902554 serine/threonine protein kinase complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1902749 regulation of cell cycle G2/M phase transition BP
GO:1902806 regulation of cell cycle G1/S phase transition BP
GO:1902807 negative regulation of cell cycle G1/S phase transition BP
GO:1902808 positive regulation of cell cycle G1/S phase transition BP
GO:1902911 protein kinase complex CC
GO:1903047 mitotic cell cycle process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1903725 regulation of phospholipid metabolic process BP
GO:1903727 positive regulation of phospholipid metabolic process BP
GO:1990234 transferase complex CC
GO:1990860 Pho85-Pho80 CDK-cyclin complex CC
GO:2000045 regulation of G1/S transition of mitotic cell cycle BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle BP
GO:2001141 regulation of RNA biosynthetic process BP