TRX z - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: TRX z
Synonym: PAP10; THIOREDOXIN PUTATIVE PLASTIDIC; TRX P; Thioredoxin z
Description: OsTRX z protein physically interacts with OsMORFs in a redox-dependent manner and that the redox state of a conserved cysteine in the MORF box is essential for MORF-MORF interactions; wp2 and OsTRX z knockout lines show reduced editing efficiencies in many plastidial-encoded genes especially under high-temperature conditions; Results suggest that thioredoxin z regulates chloroplast RNA editing in plants by controlling the redox state of MORFs
Protein Family: Thioredoxin (TRX)
Subclass: NA
Physical Interaction: AtFLN1; AtFLN2
Construct Structure: NA
Gene ID & Species: AT3G06730 (Arabidopsis thaliana)
Edited Gene(s): accD    clpP    matK    ndhB    ndhD    ndhF    ndhG    petL    psbE    psbF    psbZ    rpl23    rpoA    rpoB    rpoC1    rpl12    rps14    atpF
Editing Type(s): C-to-U (70)
Publication(s): [1] white panicle2 encoding thioredoxin z, regulates plastid RNA editing by interacting with multiple organellar RNA editing factors in rice, New Phytol, 2021. [doi:10.1111/nph.17047]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT3G06730 Chloroplast accD 1568 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products70.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products15.00%PoorDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast accD 794 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products96.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products22.00%LowDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast atpF 92 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products85.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast clpP 559 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products58.00%MediumNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products36.00%LowDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast matK 706 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products96.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products65.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 1255 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 1481 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 149 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 467 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products90.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 586 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products89.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 726 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products16.00%PoorNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products0.00%UneditedAbsent33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 746 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 830 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 838 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products77.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhB 872 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products90.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhD 2 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products44.00%MediumNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products20.00%LowDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhD 383 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhD 674 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhD 878 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products76.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products65.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhD 887 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhF 290 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products96.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products50.00%MediumDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast ndhG 50 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products95.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products72.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast petL 5 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products58.00%MediumNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products6.00%PoorDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast psbE 214 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products85.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast psbF 77 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products81.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast psbZ 50 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products84.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products48.00%MediumDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast rpl12 NA Intron NA NA NA 58 C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products35.00%LowNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products38.00%LowSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast rpl23 89 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products86.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products60.00%HighDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast rpoA 200 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products68.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products47.00%MediumDecreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast rpoB 2432 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products89.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products90.00%HighSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast rpoB 338 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products87.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products89.00%HighSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast rpoB 551 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products90.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products95.00%HighSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast rpoC1 488 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products52.00%MediumNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products70.00%HighIncreased33119889
Arabidopsis thaliana AT3G06730 Chloroplast rps14 149 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products75.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products76.00%HighSimilar33119889
Arabidopsis thaliana AT3G06730 Chloroplast rps14 80 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTWild TypeNo treatmentNo mutantNormalNA7 daysBulk sequencing of RT‐PCR products75.00%HighNone33119889
Salk_028162Ctrx zKnockoutA T‐DNA insertionKnockoutAlbinicNA7 daysBulk sequencing of RT‐PCR products76.00%HighSimilar33119889
Last update: Sep 2026 (version 2.0)