| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
atp4
|
138 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AUC=>AUU |
I=>I |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
atp4
|
250 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG/CCG=>UCG/UUG |
P=>S/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
atp4
|
416 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
ACU=>AUU |
T=>I |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
atp4
|
525 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.20% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.10% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.80% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 15.20% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
atp8
|
389 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 17.00% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 15.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 21.00% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 28.60% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 29.20% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 27.30% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
128 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.50% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.80% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 44.70% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
137 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC/UCC=>UUC/UUU |
S=>F/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.50% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
138 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC/UCC=>UCU/UUU |
S=>S/F |
Synonymous/Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.50% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 9.30% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 9.70% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 9.10% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
148 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG/CCG=>UCG/UUG |
P=>S/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.50% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
149 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG/CCG=>CUG/UUG |
P=>L/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.00% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.90% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
154 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.10% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.60% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
159 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AUC=>AUU |
I=>I |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.10% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.40% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
16 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUU=>UUU |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
160 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.10% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
164 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>CUG |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.50% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.10% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.00% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
172 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.50% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
179 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>CUU |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.30% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
181 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.70% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
193 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU/CCU=>UCU/UUU |
P=>S/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.30% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
194 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU/CCU=>CUU/UUU |
P=>L/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 46.00% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
28 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
286 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
304 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
324 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>CCU |
P=>P |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.80% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 9.60% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.50% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.20% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 12.00% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
338 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
367 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.70% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
379 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA/CCA=>UCA/UUA |
P=>S/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 48.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.90% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
380 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA/CCA=>CUA/UUA |
P=>L/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
391 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUG=>UUG |
L=>L |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.10% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.80% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.90% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.70% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
424 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
428 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
467 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
475 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA/CCA=>UCA/UUA |
P=>S/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
476 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA/CCA=>CUA/UUA |
P=>L/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
485 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
501 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>CCU |
P=>P |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.00% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.90% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.80% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.90% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
512 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
514 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
551 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
554 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
566 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UUC |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
569 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
576 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 42.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 38.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.50% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.90% | Medium | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.40% | Medium | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.00% | Medium | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
596 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
71 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
75 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 14.20% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.90% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 17.80% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.40% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmB
|
80 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.50% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.40% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
176 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>CUU |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.10% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.40% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.50% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.20% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
184 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.70% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
252 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>CCU |
P=>P |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 22.90% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 21.90% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 25.20% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 39.40% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.90% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.00% | Medium | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
270 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UCU |
S=>S |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 9.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.40% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.50% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 14.50% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 18.80% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
331 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
381 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
ACC=>ACU |
T=>T |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 15.00% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.00% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 19.60% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 31.10% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 30.10% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 32.20% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
400 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUU=>UUU |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
421 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
436 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
446 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>CUG |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
458 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
463 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
467 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
GCU=>GUU |
A=>V |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
473 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>CUG |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
497 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
521 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
548 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
568 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
575 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>CUC |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
614 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
618 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
ACC=>ACU |
T=>T |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
619 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmC
|
673 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 43.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.60% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFc
|
123 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFc
|
160 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFc
|
175 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUA=>UUA |
L=>L |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
104 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>CUU |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
143 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
157 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.80% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.30% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
262 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.10% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.90% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
269 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
289 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUU=>UUU |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.00% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.80% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.50% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.80% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
371 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.70% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 17.40% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.50% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 21.40% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
378 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.00% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.30% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
709 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU/CCU=>UCU/UUU |
P=>S/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 32.00% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.70% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.70% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
710 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU/CCU=>CUU/UUU |
P=>L/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.50% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.00% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.30% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
779 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.30% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.10% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
791 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
806 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.20% | High | None | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.10% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.60% | High | Decreased | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn1
|
955 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGC=>UGC |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
176 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
208 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.80% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
226 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
259 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
277 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
320 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.00% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.50% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 41.10% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
344 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
356 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
391 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>UCC |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
65 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
ccmFn2
|
93 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AAC=>AAU |
N=>N |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 23.90% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 24.60% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 22.80% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.20% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.50% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.80% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cob
|
114 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.30% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.90% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.50% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.20% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cob
|
118 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>UCG |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cob
|
325 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cob
|
381 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.80% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 14.50% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.00% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.00% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cob
|
497 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
ACC=>AUC |
T=>I |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.10% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.90% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.40% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.40% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cob
|
924 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUC=>CUU |
L=>L |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 29.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 30.40% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 28.10% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.80% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 33.20% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 36.30% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox2
|
27 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUC=>CUU |
L=>L |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox2
|
379 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox3
|
112 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>UCA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox3
|
245 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>CUU |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox3
|
257 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox3
|
311 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox3
|
314 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox3
|
413 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>CUU |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox3
|
567 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.80% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.00% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.70% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.10% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.00% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.30% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
cox3
|
NA |
3'UTR |
NA |
NA |
NA |
49
59
82
130
186 |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.40% | Medium | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.70% | Low | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.80% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.80% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.10% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.80% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.40% | Low | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 42.70% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.60% | High | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.90% | Poor | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.30% | High | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.80% | High | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.80% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.20% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
matR
|
1408 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.30% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.10% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 15.70% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.60% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
matR
|
1593 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 43.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 44.00% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 42.80% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.30% | Medium | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.70% | Medium | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
matR
|
1731 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC/UCC=>UCU/UUU |
S=>S/F |
Synonymous/Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.00% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
matR
|
1751 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>CUU |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
matR
|
1807 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAC=>UAC |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
matR
|
374 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
matR
|
461 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
108 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AUC=>AUU |
I=>I |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.20% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.10% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.70% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.40% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.70% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
144 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 18.00% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 19.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.00% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 42.00% | Medium | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 39.50% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.60% | Medium | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
145 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>UCG |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
161 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
164 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
173 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
175 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC/CCC=>UCC/UCU |
P=>S/S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.40% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.10% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.50% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.70% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
361 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUC=>UUC |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
364 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
377 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 33.60% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.00% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 33.00% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
379 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGC=>UGC |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
387 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 27.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 26.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 29.40% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.80% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 38.80% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 31.70% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
406 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU/CCU=>UCU/UUU |
P=>S/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.80% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.90% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
407 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU/CCU=>CUU/UUU |
P=>L/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
409 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>UCC |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
412 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
440 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
474 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUC=>CUU |
L=>L |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.50% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.50% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.10% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
505 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
530 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
538 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>UCA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
552 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UCU |
S=>S |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 28.40% | Low | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 12.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.80% | Poor | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 18.00% | Poor | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 21.70% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 33.60% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.20% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 31.60% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
581 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.40% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
586 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA/CCA=>UCA/UUA |
P=>S/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.20% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 36.40% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 38.40% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.40% | Medium | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.20% | Medium | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.70% | Medium | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
587 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA/CCA=>CUA/UUA |
P=>L/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
59 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
643 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>UCG |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
649 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUC=>UUC |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.80% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.10% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.40% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
65 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
ACG=>AUG |
T=>M |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.30% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.10% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.40% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.10% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
665 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC/UCC=>UUC/UUU |
S=>F/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
666 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC/UCC=>UCU/UUU |
S=>S/F |
Synonymous/Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 41.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 41.10% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 43.30% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
693 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AUC=>AUU |
I=>I |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.50% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
700 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
705 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 36.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.10% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.40% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
746 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.10% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.80% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
mttB
|
97 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 43.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.80% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad2
|
558 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UCU |
S=>S |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 27.70% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 28.80% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 26.10% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.50% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 41.10% | Medium | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 33.30% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
149 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UUC |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.60% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
211 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU/CCU=>UCU/UUU |
P=>S/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
212 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU/CCU=>CUU/UUU |
P=>L/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
250 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>UCU |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
254 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>CUC |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
26 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
347 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
352 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
64 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUA=>UUA |
L=>L |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
8 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad3
|
83 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4
|
1101 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UAC=>UAU |
Y=>Y |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4
|
1194 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AUC=>AUU |
I=>I |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.50% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.60% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.50% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.70% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4
|
1417 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAC=>UAC |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4
|
84 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 33.30% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 33.60% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 32.40% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 40.10% | Medium | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 39.70% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 40.50% | Medium | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
100 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>UCA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
110 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
131 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
158 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
188 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
197 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
41 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
55 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
86 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>CUU |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 99.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad4L
|
95 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad5
|
1731 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.80% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 12.80% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 19.20% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 18.40% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 19.70% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad5
|
1929 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
GAC=>GAU |
D=>D |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.20% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.40% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 12.50% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 9.40% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 14.60% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad5
|
NA |
Intron |
NA |
NA |
Genomic position |
141949
141966 |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.90% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.30% | High | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad6
|
NA |
5'UTR |
NA |
NA |
NA |
-73 |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad7
|
24 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AUC=>AUU |
I=>I |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad7
|
38 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad7
|
NA |
Intron |
NA |
NA |
Genomic position |
134300
134309 |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.30% | High | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad9
|
167 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad9
|
190 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad9
|
298 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>UCG |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad9
|
328 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.00% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad9
|
398 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad9
|
439 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUU=>UUU |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad9
|
517 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAA=>UAA |
Q=>Stop codon |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.90% | Poor | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.70% | Poor | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.30% | Poor | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.40% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.60% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.90% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.00% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
nad9
|
92 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
orf114
|
309 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
GUC=>GUU |
V=>V |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.20% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 38.90% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 44.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 31.50% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 27.30% | Low | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 42.50% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
orf114
|
327 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.00% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 48.80% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.00% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.60% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 24.10% | Low | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 41.90% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
orf240A
|
199 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 42.60% | Medium | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.40% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 42.80% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 28.70% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 32.90% | Low | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 28.40% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.20% | Medium | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.30% | Medium | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 40.90% | Medium | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
pseudo-rps14
|
194 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UUC |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.00% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.20% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.40% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.00% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
pseudo-rps14
|
99 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>CCU |
P=>P |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.70% | Poor | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.30% | Poor | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.90% | Poor | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.90% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 19.60% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 18.70% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.60% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl16
|
426 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UCU |
S=>S |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.00% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.00% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.10% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.00% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.30% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl16
|
43 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUA=>UUA |
L=>L |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.80% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.40% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.40% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 16.50% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl16
|
506 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl16
|
82 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 0.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 0.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 0.60% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.20% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.40% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.90% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl16
|
NA |
3'UTR |
NA |
NA |
NA |
327
391
1
155 |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.00% | High | None | 26578708 | | NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.30% | Low | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.60% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.20% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 29.60% | Low | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.70% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 24.10% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.10% | Poor | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.60% | Poor | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.40% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.50% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.80% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.70% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl2
|
212 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.80% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 38.30% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 23.30% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl2
|
258 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AUC=>AUU |
I=>I |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.00% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.80% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.60% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.10% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.30% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.00% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
121 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>UCC |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.40% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.40% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.50% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.30% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
169 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGC=>UGC |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.00% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 44.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 40.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.80% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.00% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.40% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
270 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
GAC=>GAU |
D=>D |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.10% | Poor | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.00% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 0.90% | Poor | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.80% | Poor | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.00% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.80% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.80% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.90% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
317 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.30% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.80% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.30% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
329 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
35 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.60% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.60% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 32.40% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 38.80% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 46.00% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.30% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
47 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>CUG |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.00% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 30.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 29.70% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 32.10% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.70% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
512 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.10% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.20% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 46.60% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
58 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG/CCG=>UCG/UUG |
P=>S/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 15.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 15.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 15.20% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
59 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG/CCG=>CUG/UUG |
P=>L/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.60% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.00% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 33.10% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 42.30% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.40% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
64 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAC=>UAC |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.50% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.30% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 18.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 23.50% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 29.90% | Low | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 43.90% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rpl5
|
92 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.70% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.30% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 32.60% | Low | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 85.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
104 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>CUG |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.30% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.60% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.10% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.80% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.70% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
146 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.20% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.20% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.60% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.00% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
159 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
GCC=>GCU |
A=>A |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.10% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 25.90% | Low | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 25.90% | Low | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 25.90% | Low | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
196 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAC=>UAC |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.40% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.70% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
221 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.20% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.50% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.90% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
269 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.70% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.40% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.00% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.40% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
284 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC/UCC=>UUC/UUU |
S=>F/F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.20% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.90% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
285 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC/UCC=>UCU/UUU |
S=>S/F |
Synonymous/Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.40% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.80% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.90% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps12
|
84 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>CCU |
P=>P |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.30% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.40% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.60% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.10% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.70% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
126 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 7.60% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.90% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 9.20% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 12.20% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
1344 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
AGC=>AGU |
S=>S |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.00% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 74.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
1352 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>CUG |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.60% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 98.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
1470 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UCU |
S=>S |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.50% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.00% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
1534 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.00% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.90% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
1580 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 5.70% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 14.30% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 14.80% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.50% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
187 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CUA=>UUA |
L=>L |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 0.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 0.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 0.40% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.20% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.80% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.70% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
210 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.30% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.70% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 10.60% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 9.40% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.80% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps3
|
887 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.30% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.00% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 79.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 75.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
1042 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA/CCA=>UCA/UUA |
P=>S/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.00% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.00% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.30% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.80% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
1043 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA/CCA=>CUA/UUA |
P=>L/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.30% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 41.20% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.30% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.10% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 76.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
1052 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCU=>CUU |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.70% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.60% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.60% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.70% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 80.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.60% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
1057 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.60% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.10% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.10% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 82.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
175 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>UCG |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.20% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 29.80% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.50% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 21.50% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.40% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.20% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.00% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.50% | Medium | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
226 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCC=>UCC |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.90% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.10% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 43.50% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.90% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.90% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.30% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.80% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.30% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
235 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.10% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.80% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 32.90% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 51.20% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 47.70% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
299 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.90% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 56.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 46.70% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.50% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.30% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.40% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.80% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
308 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.60% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 34.60% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.20% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.40% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 84.60% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.40% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
332 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>CUG |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 83.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.10% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 62.40% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.10% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.20% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
377 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CCG=>CUG |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.50% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.40% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 64.10% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.30% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.50% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.20% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 95.30% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.60% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
441 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCC=>UCU |
S=>S |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.50% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 0.50% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 6.80% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.30% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.90% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
524 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.50% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.20% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.00% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.60% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.50% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 97.10% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.10% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
738 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UUC=>UUU |
F=>F |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.40% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.60% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 4.00% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 12.70% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 13.90% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 11.30% | Poor | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
77 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.10% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 49.60% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 58.00% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 37.60% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 55.30% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.70% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 91.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 87.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
88 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CGG=>UGG |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.60% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 40.90% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 45.00% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 35.00% | Low | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.00% | Medium | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 50.50% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 92.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.50% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
956 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCG=>UUG |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.80% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 73.90% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 69.60% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 77.60% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 72.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 93.40% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 96.70% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
967 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.00% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.50% | Medium | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.80% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 40.60% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.00% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 57.10% | Medium | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.70% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 78.90% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps4
|
992 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 88.30% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 63.20% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 65.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 59.30% | Medium | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 71.20% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 68.80% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.90% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 94.50% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 86.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps7
|
332 |
CDS |
NA |
NA |
NA |
NA |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | Not inoculated | Control | Control | Control | Normal | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 81.20% | High | None | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 66.70% | High | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 70.30% | High | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 60.50% | High | Decreased | 26578708 | | NA | ORRM4sil_1 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 67.60% | High | Decreased | 26578708 | | NA | ORRM4sil_2 | Transient Silencing | Plants inoculated with agrobacterium carrying an ORRM4/GFP cosilencing construct | The mRNA expression level of ORRM4 is reduced to ~16% compared to the uninoculated and the GFP-silenced controls | No morphological defects | Seedling | 2 weeks | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 61.50% | High | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.80% | High | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 90.20% | High | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 89.20% | High | None | 26578708 |
|
| Arabidopsis thaliana |
AT1G74230 |
Mitochondrion |
rps7
|
NA |
5'UTR |
NA |
NA |
NA |
-217
-206
-162 |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 20.80% | Low | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 2.20% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | NA | NA | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 18.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.70% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_1 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.90% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 23.90% | Low | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.10% | Poor | Decreased | 26578708 | | SALK_023061C | orrm4_2 | T-DNA Insertion | T-DNA is inserted in an intron separating the 5'UTR from the first exon of ORRM4 | Knockout | Slow growth and late flowering | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 1.50% | Poor | Decreased | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 53.30% | Medium | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.70% | Poor | None | 26578708 | | Col-0 | wt | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.50% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 54.10% | Medium | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.60% | Poor | None | 26578708 | | Col-0 | wt_1 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.90% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 52.20% | Medium | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 8.90% | Poor | None | 26578708 | | Col-0 | wt_2 | Control | Control | Control | Normal | NA | NA | Strand and Transcript Specific RNA-seq Method (STS-PCRseq) | 3.00% | Poor | None | 26578708 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp1
|
1490 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 44.50% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.97% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
215 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.61% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 83.12% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
227 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.82% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 82.11% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
248 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.23% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 82.75% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
251 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.46% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 82.72% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
306 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.61% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.88% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
395 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 69.67% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 85.52% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
407 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.03% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 85.55% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
416 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
T=>I |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 66.09% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 84.59% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
59 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 50.79% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 79.92% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
71 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 50.04% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 79.43% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp4
|
89 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 48.69% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 77.29% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp6
|
1170 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.52% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.53% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp6
|
606 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 69.97% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 50.20% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp6
|
619 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 85.14% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 93.80% | High | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp6
|
807 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.99% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 2.68% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp6
|
852 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 79.18% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.30% | High | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp8
|
30 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.80% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.47% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp8
|
39 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.27% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.70% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp8
|
443 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 47.06% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 64.97% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp8
|
47 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.37% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.83% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp8
|
58 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 42.21% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.45% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp8
|
76 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 42.08% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.54% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
182 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.74% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.78% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
191 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 48.01% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.97% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 42.10% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.98% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
20 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.78% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 81.63% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.39% | Low | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 67.06% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
212 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 45.65% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.42% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.73% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.15% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
223 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
Q=>NA |
Nonsense |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 44.86% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.14% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.78% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.99% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
50 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 82.85% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.97% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 69.08% | High | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.29% | Low | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
81 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 81.59% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.33% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.71% | High | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.84% | Low | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
82 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 83.70% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.93% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.98% | High | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.06% | Low | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
90 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 77.92% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.67% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 66.72% | High | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.79% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
atp9
|
92 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 82.56% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.18% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 68.30% | High | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.43% | Low | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
atpA
|
795 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 9.47% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 7.47% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
160 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.20% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 2.54% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
43 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.57% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.38% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
467 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.13% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 4.69% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
475 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.91% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 2.40% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
476 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.48% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 2.26% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
551 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 7.84% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 3.61% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
554 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 7.66% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 3.27% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
566 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.87% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 4.64% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
569 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.41% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 4.93% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
572 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.76% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 4.32% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
596 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.58% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.15% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
611 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.09% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.52% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmB
|
80 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.29% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.84% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
115 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.48% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.71% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
133 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.81% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.15% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
14 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.61% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.16% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
161 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.93% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.53% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
179 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
A=>V |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.54% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.38% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
184 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.48% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.71% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
281 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
T=>I |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.48% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.76% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
299 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.70% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.64% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
331 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.77% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.95% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
5 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.45% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.71% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmC
|
6 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.75% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.86% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
103 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 18.66% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.22% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
122 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.05% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.28% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
1239 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.90% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.56% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
155 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.91% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.71% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
334 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.34% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.11% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
38 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 18.94% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.32% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
391 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.02% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.07% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
406 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.11% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.69% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
50 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 18.01% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.39% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
52 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.86% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.41% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
706 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.91% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.83% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
707 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.33% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.04% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFc
|
NA |
NA |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 7.68% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 2.69% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1291 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.23% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 18.25% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1319 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.42% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.72% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1351 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.85% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.65% | Poor | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1369 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.31% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.80% | Poor | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1402 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.88% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.93% | Poor | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1420 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.00% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.61% | Poor | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1463 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.06% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.64% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1487 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.26% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.70% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1499 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.13% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.54% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
1534 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.99% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.66% | Low | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
ccmFn
|
283 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 18.25% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.51% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cob
|
114 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.14% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 1.53% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cob
|
298 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.55% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.29% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cob
|
325 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 42.63% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 58.87% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cob
|
358 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 45.91% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.66% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cob
|
53 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
T=>I |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.70% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 54.57% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cob
|
680 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 51.94% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 57.69% | Medium | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cob
|
908 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 49.67% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.14% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cox1
|
11 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 51.13% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 58.77% | Medium | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cox1
|
1405 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 84.94% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 73.37% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cox1
|
1433 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 85.25% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 72.95% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cox1
|
1489 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 83.72% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 69.79% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cox1
|
15 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.69% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.06% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
cox1
|
2 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
T=>M |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.89% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 54.93% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
matR
|
1700 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.59% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.67% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
matR
|
1734 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.30% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.82% | Low | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
matR
|
1756 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.56% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.50% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
matR
|
1787 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.65% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.98% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
matR
|
1844 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.21% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.73% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
matR
|
236 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.67% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.31% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
181 |
CDS |
Tomato reference genome (version SL2.50) |
MF766469 |
NA |
NA |
C-to-U |
CCA/CCA=>UCA/UUA |
P=>S/L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Increased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | 0.00% | Unedited | None | 29061908 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
275 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.07% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.11% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
303 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.57% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.18% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
661 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.39% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.38% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
667 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.60% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.62% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
7 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>NA |
Nonsense |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 7.52% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.90% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
718 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.04% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.52% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
719 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.72% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.94% | Low | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
mttB
|
764 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.27% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.50% | Low | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast
Mitochondrion |
NA
|
NA |
NA |
NA |
NC_007898.3
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 8.69% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 12.63% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 6.99% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 8.18% | Poor | Similar | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.72% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.40% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 69.41% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.32% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.66% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.34% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.90% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.95% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.30% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 57.15% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 33.89% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 62.59% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 63.18% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 64.29% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.86% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.52% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.36% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.34% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.28% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.93% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.54% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.69% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 56.93% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.78% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.20% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 46.23% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 51.45% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 48.09% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.73% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.94% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.25% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 7.46% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.91% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.41% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.43% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.18% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.83% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.94% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.09% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.61% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.80% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.25% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.03% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.57% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.65% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.24% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.30% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.07% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.63% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.63% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.86% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.72% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.08% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.34% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.27% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.83% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 73.62% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.76% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.38% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 54.75% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.53% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 68.75% | High | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.25% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.20% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 34.03% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 33.23% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.23% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.70% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.80% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.96% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.72% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.76% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.83% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.68% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.01% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.96% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.10% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.76% | Medium | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.46% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.59% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.74% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 34.55% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.95% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.21% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.78% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.22% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.49% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.69% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.02% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.62% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 7.25% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.75% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.90% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.26% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.29% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.08% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.43% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.22% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.89% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 18.67% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.19% | Low | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.25% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.17% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 7.81% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.28% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.85% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 7.31% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.82% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.81% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 47.57% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.41% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.31% | Low | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.34% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.79% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.99% | Poor | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.27% | Low | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.19% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.43% | Low | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.58% | Medium | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.82% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.22% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.73% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.36% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 46.85% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.65% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 47.26% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 46.81% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 46.79% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.35% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 67.22% | High | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 44.44% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 69.93% | High | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 66.15% | High | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 66.80% | High | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 59.68% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 67.14% | High | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 62.76% | High | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.80% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.10% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.30% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.56% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 68.61% | High | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.43% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.91% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.94% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.99% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.01% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.80% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.63% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.67% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.10% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.92% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.91% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.92% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.66% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 34.30% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.29% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.39% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.46% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 34.09% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.40% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.09% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.25% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.32% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.18% | Medium | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 42.77% | Medium | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.70% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 4.50% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.06% | Medium | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.74% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 76.05% | High | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.92% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 33.76% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.03% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.44% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.65% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.66% | Medium | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.19% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 33.54% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.26% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.59% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.02% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.19% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 51.31% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.06% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 58.05% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 59.10% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 56.24% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 56.48% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 56.86% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 50.73% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.18% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.91% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.21% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.58% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 56.67% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.88% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.58% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.16% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.74% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.39% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.10% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.42% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 49.57% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.77% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.41% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.16% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.22% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.45% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 50.47% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.66% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.89% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.84% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.00% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.56% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 18.70% | Poor | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 46.08% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.19% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
146 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 91.08% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 77.75% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
208 |
CDS |
Tomato reference genome (version SL2.50)
NA |
MF766469
NC_035963.1 |
NA |
NA |
C-to-U |
CCU/CCU=>UCU/UUU
NA=>NA |
P=>S/F
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Decreased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | Similar | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 86.94% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 59.36% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
209 |
CDS |
Tomato reference genome (version SL2.50)
NA |
MF766469
NC_035963.1 |
NA |
NA |
C-to-U |
CCU/CCU=>CUU/UUU
NA=>NA |
P=>L/F
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Decreased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | Similar | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | 100.00% | Complete | None | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Leaf | 32 dpa | Direct Sequencing of PCR Products | 100.00% | Complete | None | 29061908 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 87.26% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.06% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
215 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 87.64% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.04% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
230 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 89.06% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.88% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
247 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 87.81% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 51.82% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
251 |
CDS |
Tomato reference genome (version SL2.50)
NA |
MF766469
NC_035963.1 |
NA |
NA |
C-to-U |
CCC=>CUC
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Decreased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | Similar | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 86.07% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 46.03% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
266 |
CDS |
Tomato reference genome (version SL2.50)
NA |
MF766469
NC_035963.1 |
NA |
NA |
C-to-U |
CCA=>CUA
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Decreased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Leaf | 32 dpa | Direct Sequencing of PCR Products | 100.00% | Complete | Similar | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | 100.00% | Complete | None | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Leaf | 32 dpa | Direct Sequencing of PCR Products | 100.00% | Complete | None | 29061908 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 85.28% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 66.41% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
275 |
CDS |
Tomato reference genome (version SL2.50)
NA |
MF766469
NC_035963.1 |
NA |
NA |
C-to-U |
UCU=>UUU
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Decreased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | Similar | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 87.15% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.90% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad3
|
317 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 80.04% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 62.84% | High | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
1006 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.96% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.38% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
1010 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.26% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.36% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
1016 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.28% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 44.91% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
107 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.49% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 45.07% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
124 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 13.72% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.88% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
154 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.58% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 44.37% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
158 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.62% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.86% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
166 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.87% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 45.02% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
197 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.77% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.97% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
261 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.73% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.21% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
29 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.28% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.74% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
362 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
T=>I |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.69% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 46.13% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
376 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.55% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 48.88% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
433 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.82% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 48.61% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
436 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.38% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 48.60% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
437 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 28.67% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 48.37% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
577 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 36.63% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 50.92% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
608 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.40% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.61% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
659 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.58% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.07% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
74 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
T=>I |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.67% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 21.17% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
767 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
A=>V |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.51% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.63% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
77 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.95% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.48% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
836 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.68% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 53.21% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
837 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.13% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.84% | Poor | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
887 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.41% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 50.58% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
952 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.44% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 34.10% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4
|
953 |
CDS |
Tomato reference genome (version SL2.50) |
MF766469 |
NA |
NA |
C-to-U |
AUC=>AUU |
I=>I |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Low | Decreased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
100 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.11% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.70% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
110 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.39% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.79% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
131 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 23.84% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 44.46% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
158 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.14% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.96% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
179 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.03% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.95% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
188 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.17% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 63.71% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
197 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 40.75% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 64.65% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
252 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.85% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.01% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
281 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.54% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 74.22% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
47 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.81% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.60% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad4L
|
95 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.33% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.86% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad6
|
103 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 69.14% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.42% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad6
|
159 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.23% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 3.75% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad6
|
161 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.38% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 54.02% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad6
|
191 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 72.01% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.20% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad6
|
26 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 66.26% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 54.18% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad6
|
569 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 58.57% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 50.71% | Medium | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad6
|
88 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
L=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.17% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.89% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad6
|
95 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.55% | High | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.86% | Medium | Decreased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
1050 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 33.09% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.50% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
1057 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.56% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.55% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
1088 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.39% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.02% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
1103 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.73% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 60.65% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
1124 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.30% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 58.59% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
1137 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.55% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 17.64% | Poor | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
1166 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.52% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 55.63% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
200 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.98% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.47% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
209 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 11.18% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 24.16% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
244 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.95% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.16% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
251 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.06% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 41.87% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
316 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 19.12% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.44% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
335 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.51% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 45.61% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
344 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.53% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 46.04% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
38 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.04% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.04% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
383 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 22.61% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 49.58% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
444 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.05% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.66% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
578 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 25.00% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 57.40% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
724 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.50% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 57.67% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
739 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.42% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 57.10% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
740 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.57% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 57.22% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
769 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 29.98% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 51.47% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
77 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 14.41% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.33% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
83 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.84% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 38.16% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
926 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.10% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 30.68% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
944 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.43% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 58.77% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
973 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 35.68% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 61.86% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad7
|
NA |
NA |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
NA |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.22% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.93% | Poor | None | 32473605 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.50% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 20.19% | Low | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.76% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.89% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad9
|
298 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 39.62% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 45.59% | Medium | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
nad9
|
92 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.56% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 42.01% | Medium | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
ndhD
|
1470 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 6.67% | Poor | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 5.30% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
ndhD
|
599 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 54.05% | Medium | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 60.83% | High | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rpl2
|
206 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.66% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rpl2
|
NULL |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 9.89% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
rpoA
|
200 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 28.04% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 22.16% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
rpoA
|
65 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
T=>I |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 23.71% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 19.92% | Poor | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
rpoB
|
2000 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 21.10% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 26.27% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
rpoB
|
2426 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 22.41% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 26.24% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
rpoB
|
338 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 27.38% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 35.97% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
rpoB
|
473 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 27.39% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 37.09% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Chloroplast |
rpoB
|
551 |
CDS |
NA |
NC_007898.3 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 21.52% | Low | None | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Pale-green leaves | Leaf | Two-week-old | ssRNA-seq assay and the REDiscover tool | 27.69% | Low | Similar | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps10
|
2 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
T=>M |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 32.02% | Low | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps10
|
238 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.19% | Low | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps10
|
302 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 44.94% | Medium | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps10
|
43 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>S |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.89% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps10
|
NULL |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W
P=>S
S=>L
T=>M |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.36% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 31.68% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 58.43% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.34% | Medium | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps13
|
100 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 10.32% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps13
|
287 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 37.65% | Low | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps13
|
343 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.35% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps13
|
56 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.50% | Low | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps13
|
NULL |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W
R=>C
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 27.47% | Low | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 51.19% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 56.58% | Medium | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 64.55% | High | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps4
|
1004 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.78% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps4
|
1018 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.47% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps4
|
278 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.82% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps4
|
289 |
CDS |
Tomato reference genome (version SL2.50) |
MF766469 |
NA |
NA |
C-to-U |
UCC=>UCU |
S=>S |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Increased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Poor | None | 29061908 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps4
|
290 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.92% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps4
|
347 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 5.53% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
rps4
|
NULL |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
R=>W
P=>L
S=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.43% | Poor | Increased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.23% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.75% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 15.33% | Poor | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 16.02% | Poor | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh3
|
74 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 12.79% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh3
|
NULL |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 26.04% | Low | Increased | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
132 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 18.84% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
153 |
CDS |
Tomato reference genome (version SL2.50)
NA |
MF766469
NC_035963.1 |
NA |
NA |
C-to-U |
UUC=>UUU
NA=>NA |
F=>F
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Low | Decreased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Similar | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 75.26% | High | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
155 |
CDS |
Tomato reference genome (version SL2.50)
NA |
MF766469
NC_035963.1 |
NA |
NA |
C-to-U |
CCA=>CUA
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | Medium | Decreased | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | slorrm4#1 | Cas9 | pYLCRISPR/Cas9Pubi-H-SlORRM4 vector | Knockout | Dramatic delays in fruit ripening, with significantly decreased respiratory rates and ethylene production | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | Similar | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Fruit | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | Solanum lycopersicum cv. Micro-Tom (MT) | WT | Control | Control | Control | Normal | Leaf | 32 dpa | Direct Sequencing of PCR Products | NA | High | None | 29061908 | | NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 80.38% | High | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
186 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 8.02% | Poor | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
192 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
NA=>NA |
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 80.37% | High | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
203 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
P=>L |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 81.91% | High | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
259 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
H=>Y |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 77.61% | High | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
353 |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
S=>F |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | WT | Control | Control | Control | Normal | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 59.90% | Medium | None | 32473605 |
|
| Solanum lycopersicum |
NA |
Mitochondrion |
sdh4
|
NULL |
CDS |
NA |
NC_035963.1 |
NA |
NA |
C-to-U |
NA=>NA |
H=>Y
NA=>NA
P=>L
S=>F |
Recoding
Synonymous |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 68.16% | High | Similar | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 6.29% | Poor | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 52.35% | Medium | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 62.33% | High | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 70.45% | High | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 43.68% | Medium | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 69.05% | High | Decreased | 32473605 | | NA | slorrm4 | T4 generation of CRISPR/Cas9-mediated SlORRM4 mutants | The SlORRM4 gene was knocked out by a 544-bp deletion created by CRISPR/Cas9 gene editing. | Knockout | Delayed fruit ripening | Fruit | 36 days post anthesis (DPA) | ssRNA-seq assay and the REDiscover tool | 4.69% | Poor | Similar | 32473605 |
|
