Panicum virgatum - Plant Editosome Database - BIG Data Center

Summary

Species: Panicum virgatum
NCBI Taxonomy: 38727
Organelle:Chloroplast (NC_015990.1)
Edited Genes:22
Editing Events:35
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpA137043CDSNAmRNAC-to-UNA=>NAS=>L
matK11949CDSNAmRNAC-to-UNA=>NAH=>Y
ndhA4115750
115327
114226
113719
CDS
CDS
CDS
CDS
NA
NA
NA
NA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
S=>L
S=>L
S=>L
S=>F
ndhB690411
90292
90267
90141
89338
88687
CDS
CDS
CDS
CDS
CDS
CDS
NA
NA
NA
NA
NA
NA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
P=>L
H=>Y
S=>L
P=>L
S=>L
P=>L
ndhD2112248
110114
Intron
CDS
NA
NA
mRNA
mRNA
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
S=>L
ndhF1106561CDSNAmRNAC-to-UNA=>NAS=>L
Novel11333NANAUnanotated TranscriptC-to-UNA=>NANA=>NA
petB173896CDSNAmRNAC-to-UNA=>NAP=>L
psbB170506CDSNAmRNAC-to-UNA=>NAA=>V
psbE163403CDSNAmRNAC-to-UNA=>NANA=>NA
psbF163090CDSNAmRNAC-to-UNA=>NANA=>NA
rbcL256629
57277
CDS
CDS
NA
NA
mRNA
mRNA
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpl2183790CDSNAmRNAC-to-UACG=>AUGT=>M
rpl20167672CDSNAmRNAC-to-UNA=>NAS=>L
rpoA176054CDSNAmRNAC-to-UNA=>NAS=>F
rpoB321428
21356
21278
CDS
CDS
CDS
NA
NA
NA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
P=>L
S=>L
S=>L
rpoC2229089
29017
CDS
CDS
NA
NA
mRNA
mRNA
C-to-U
C-to-U
NA=>NA
NA=>NA
S=>L
S=>L
rps14138255CDSNAmRNAC-to-UNA=>NAS=>L
rps1615219IntronNAmRNAC-to-UNA=>NANA=>NA
rps2131316CDSNAmRNAC-to-UNA=>NAT=>I
rps8178098CDSNAmRNAC-to-UNA=>NAS=>L
ycf3144666CDSNAmRNAC-to-UNA=>NAT=>M

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)