NGDC Cloud

Analysing pairwise distance distribution and classification of viral genomes within the family Viridae and taxonomic prediction of new viral sequences

Comprehensive analysis of viral genome

Functional annotation of mutation sites, displaying changes in the gene, code, and amino acids where the mutation site is located, and the degree of impact on gene function.

Construct a monolithic network using the Minimum Tree Graph based Monomorphic Network Construction Method (McAN).

Use Pangolin software to perform Pango lineage prediction on the sequence.

Detecting SNP/indel mutation sites; Functional annotation of variant sites; Annotate 190 gene machine protein products of monkeypox genome;

Functional annotation of mutation sites, displaying changes in the gene, code, and amino acids where the mutation site is located, and the degree of impact on gene function.

Calculate the most closely related sequence according to COVID-19 genome or mutation data

The original data of the second generation sequencing were spliced, and the COVID-19 sequences contained in the sample assembly results were detected.

Gene annotation of COVID-19 sequence.

Use FastQC and MultiQC programs to evaluate the sequence quality of files in FASTQ and BAM formats.

Constructing a phylogenetic tree using maximum likelihood method