BIT Tools
12 tools
Needleman-Wunsch global alignment of two sequences
Smith-Waterman local alignment of sequences
Draw a threshold dotplot of two sequence
Draw a non-overlapping wordmatch dotplot of two sequences
Display a wordmatch dotplot of two sequences
Draw dotplots for all-against-all comparison of a sequence set
Beta diversity PERMANOVA and ANOSIM tests and plotting using distance matrices
Extracting ribosomal RNA fragments from metagenomic sequencing data.
Profiling microbial community composition from sequencing data.
The Parallel-Meta Suite Pipeline automates microbial sequence analysis, taxonomic classification, and functional profiling.
Annotating microbial taxonomy from amplicon sequence data.
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences