Bulk RNA-seq Data Analysis
Bulk RNA-seq Data Analysis
CCLHunter
Identification of cancer cell line types by RNA sequencing data
CIRI-deep
Predict differentially spliced circRNAs.
CIRI3
CIRI3 is a comprehensive analysis package for the detection and quantification of circRNAs in RNA-Seq data
Cross-disease analysis
Cross-disease analysis
Disease prediction
Disease prediction
Editing site annotation
Editing site annotation
Editing site identification
Editing site identification
EFDetector
EFDetector is used to identify plant candidate RNA editing factors, including PPR, MORF, ORRM, and OZ, and their subcellular localization.
FunGen
Fungen is a reference-free tool to construct accurate transcripts using long-read metatranscriptomic data through read clustering and error correction.
Gene-disease network construction
Gene-disease network construction
HELIX
HELIX is a deep learning model that integrates pre-mRNA sequence and RNA-binding protein (RBP) expression profiles to predict tissue- and condition-specific splicing patterns and transcript isoform usage.
NCSelPred
Computing selection pressure of genomic elements.
Single-cell RNA-seq Data Analysis
Single-cell RNA-seq Data Analysis
SPIRAL
Circadian analysis of the single time-point transcriptome data
TIVar diff
Prediction of translation initiation efficiency and changes by SNP/Indel variation.
TIVar predict
Prediction of translation initiation efficiency and changes by SNP/Indel variation.
Visualization of scRNA-seq Data Analysis Results
Visualization of scRNA-seq Data Analysis Results