a robust deep learning approach for detecting APA in low-depth bulk and scRNA-seq
APAcatcher
Cross-model analysis
Comparative analysis of hematopoietic cells in vivo/in vitro
Cross-species analysis
Cross species analysis of hematopoietic cells
Cross-stages analysis
Cross tissue analysis of hematopoietic cells
Homolog Finder
Search for homologous genes among different tropical crops
LUTLSRS
A model for secondary typing of lung adenocarcinoma based on TLS as well as prognostic survival prediction
MEFE
Flexible biomarker discovery via phylogeny- and function-aware feature extraction
MIA
A machine learning algorithm for multi-omics integrative analysis with precision clustering and feature selection
MT-tracker
Qualitative and quantitative exploration of microbial community transitions
ncRNA-eQTL
Pathogen identification platform
PM-parse-mip
Quantitative pathogenic risk assessment via microbiome analysis
PM-predict-func
Predicting microbial functional profiles from sequencing data.
PM-predict-func-contribute
Predicting functional contributions of microbes from 16S sequencing data.
PM-predict-func-nsti
Computing the Nearest Sequenced Taxonomy Index (NSTI) from 16S sequencing data.
PM-rand-rare
Performs sequencing depth normalization to mitigate biases in diversity analysis.
PM-select-func
Parses and generates abundance tables at various taxonomic or functional levels.
PM-select-taxa
Parses and generates abundance tables at various taxonomic or functional levels.
PM-split-seq
A tool to demultiplex sequences from a single file into per-sample files.
TaxaCal
Species-level taxonomy calibration and cross-platform correction for 16S microbiome data