BIT Tools
31 tools
This program produces a manhattan plot given a snp file and other settings.
Draw a QQ plot for the given dataset
Alpha diversity index calculation and plotting
Plot relative abundance bar graph
Hierarchical clustering by distance matrix
Draw distance matrix heatmap
Candidate biomarker selection by regression
Candidate biomarker selection by rank sum test
Ranking biomarkers by random forest importance scoring
Co-occurrence network mapping using correlations among community members
Perform principal component analysis (PCA) and plot
Perform principal coordinate analysis (PCoA) and plotting
Draw a bar plot for the given dataset
Draw a box plot for the given dataset
Draw a comutation plot for the given dataset
Draw a dot plot for the given dataset
Draw a forest plot for the given dataset
Draw a heatmap for the given dataset
Draw a histogram for the given dataset
Draw a lollipop for the given dataset
Draw a MAF summary for the given dataset
Draw a oncoprint for the given dataset
Draw a survival plot for the given dataset
Draw a MAF titv for the given dataset
Draw an upset for the given dataset
Draw a venn plot for the given dataset
Computing feature correlation coefficients and constructing co-occurrence networks.
Computing functional distances between samples and visualizing through heatmaps and cluster analysis.
Computing Meta-Storms distances between samples and visualizing through heatmaps and cluster analysis.
Visualizing microbial community composition from sequencing data using Krona.
Generates rarefaction curves to show how alpha diversity changes with the number of sequences.