MORF9 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: MORF9
Synonym: MULTIPLE ORGANELLAR RNA EDITING FACTOR 9, RIP9
Description: Encodes an editing factor involved at almost all RNA editing sites in chloroplasts.
Protein Family: MORF/RIP
Subclass: NA
Construct Structure: NA
Gene ID & Species: AT1G11430 (Arabidopsis thaliana)
Edited Gene(s): ndhB    ndhD    psbF    atpF    clpP    accD    matK    ndhF    ndhG    petL    rpoB    rps14    rpoA    psbZ    rps12    rpl23
Editing Type(s): C-to-U (64)
Publication(s): [1] Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants, PNAS, 2012. [PMID=22411807]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT1G11430 Chloroplast accD 794 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products4.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products89.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast accD 58642 3'UTR C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products40.00%MediumIncreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products20.00%LowNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast atpF 92 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products10.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast clpP 559 CDS C-to-U CAU=>UAU H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products40.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products80.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast matK 706 CDS C-to-U CAU=>UAU H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products50.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products70.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 149 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products10.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products90.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 467 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products15.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products90.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 586 CDS C-to-U CAU=>UAU H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products10.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 746 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products50.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 830 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products50.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 836 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products0.00%UneditedAbsent22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 872 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products0.00%UneditedAbsent22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products85.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 1255 CDS C-to-U CAU=>UAU H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products15.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhB 1481 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products10.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhD 2 CDS C-to-U ACG=>AUG T=>M Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products0.00%UneditedAbsent22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products45.00%MediumNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhD 383 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products40.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products90.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhD 674 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products50.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products80.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhD 878 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products10.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products80.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhD 887 CDS C-to-U CCC=>CUC P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products10.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhF 290 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products40.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast ndhG 50 CDS C-to-U UCC=>UUC S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products0.00%UneditedAbsent22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast petL 5 CDS C-to-U CCU=>CUU P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products0.00%UneditedAbsent22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast psbF 65 CDS C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products70.00%HighDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast psbZ 50 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products30.00%LowDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast rpl23 89 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products0.00%UneditedAbsent22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products70.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast rpoA 200 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products0.00%UneditedAbsent22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products50.00%MediumNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast rpoB 338 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products70.00%HighDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products90.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast rpoB 551 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products60.00%HighDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products90.00%HighNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast rpoB 2432 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products80.00%HighDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast rps12 69553 Intronic C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products10.00%PoorDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products20.00%LowNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast rps14 80 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products50.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products100.00%CompleteNone22411807
Arabidopsis thaliana AT1G11430 Chloroplast rps14 149 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SALK_013483 (E) (R)morf9-1T-DNA InsertionNAHomozygousDefects in greening in lightLeafNADirect Sequencing of PCR Products50.00%MediumDecreased22411807
ColWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR Products95.00%HighNone22411807
Last update: Jul 2021 (version 1.0)