Pelargonium alternans - Plant Editosome Database - BIG Data Center

Summary

Species: Pelargonium alternans
NCBI Taxonomy: 73178
Organelle:Chloroplast (NC_023261.1)
Edited Genes:23
Editing Events:65
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpA217385
17619
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
atpF119078CDS-mRNAC-to-UCCA=>CUAP=>L
ccsA1134721CDS-mRNAC-to-UCCA=>UCAP=>S
clpP183171CDS-mRNAC-to-UCUU=>UUUL=>F
matK611211
11073
10887
10725
10536
10337
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
CAC=>UAC
CAU=>UAU
CGG=>UGG
CUU=>UUU
UCA=>UUA
L=>F
H=>Y
H=>Y
R=>W
L=>F
S=>L
ndhA3129648
129141
128916
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
UCA=>UUA
S=>F
S=>L
S=>L
ndhB9160953
161271
161390
161541
161550
161634
161640
162059
162285
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
CAU=>UAU
CCA=>CUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
CAC=>UAC
CCA=>CUA
S=>L
P=>L
H=>Y
P=>L
S=>F
S=>L
S=>L
H=>Y
P=>L
ndhD5133746
133639
133219
133015
132724
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
UCA=>UUA
UCG=>UUG
UCA=>UUA
UCA=>UUA
L=>F
S=>L
S=>L
S=>L
S=>L
ndhF5145099
145198
145229
145525
147149
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
CAU=>UAU
UCA=>UUA
CUU=>UUU
UCC=>UUC
L=>F
H=>Y
S=>L
L=>F
S=>F
ndhG1130909CDS+mRNAC-to-UACA=>AUAT=>I
petB189262CDS+mRNAC-to-UCGG=>UGGR=>W
petD190566CDS+mRNAC-to-UGCA=>GUAA=>V
psbE177120CDS-mRNAC-to-UCCU=>UCUP=>S
psbF176992CDS-mRNAC-to-UUCU=>UUUS=>F
psbL176925CDS-mRNAC-to-UACG=>AUGT=>M
rpl21165084CDS+mRNAC-to-UGCU=>GUUA=>V
rpl20381381
81433
81558
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
CAC=>UAC
GCU=>GUU
S=>L
H=>Y
A=>V
rpoB533747
33209
33093
33051
31871
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
UCG=>UUG
CUU=>UUU
CUU=>UUU
ACU=>AUU
L=>F
S=>L
L=>F
L=>F
T=>I
rpoC1627713
28464
28670
28760
29184
29684
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACU=>AUU
CCG=>UCG
GCU=>GUU
ACG=>AUG
CUU=>UUU
ACC=>AUC
T=>I
P=>S
A=>V
T=>M
L=>F
T=>I
rpoC2527565
26440
25664
24920
23554
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
GCC=>GUC
ACA=>AUA
CUU=>UUU
CCC=>UCC
UCC=>UUC
A=>V
T=>I
L=>F
P=>S
S=>F
rps14250572
50503
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
rps2322622
22981
23171
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCG=>UCG
UCA=>UUA
CUU=>UUU
P=>S
S=>L
L=>F
ycf3144689CDS+mRNAC-to-UCCA=>UCAP=>S

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)