ORRM2 - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: ORRM2
Synonym: Organelle RRM Protein 2
Description: Encoding a RRM-containing protein required for mitochondrial RNA editing
Protein Family: ORRM
Subclass: NA
Physical Interaction: ORRM3
Construct Structure: NA
Gene ID & Species: AT5G54580 (Arabidopsis thaliana)
Solyc07g063900 (Solanum lycopersicum)
Edited Gene(s): rpl16    ccmFc    rps12    cob    nad7    nad5    rps3    nad2    nad4    rps4    nad9    pseudo-rps14    ccmC    rps7    ccmB    nad6    orf114    rpl5    mttB    nad3    atp8    atp9    rps10    rps13    sdh3    atp4    atp6    cox1    sdh4
Editing Type(s): C-to-U (158)
Publication(s): [1] RNA editing factor SlORRM2 regulates the formation of fruit pointed tips in tomato., Plant physiology, 2024. [PMID=38668628]
[2] Two RNA recognition motif-containing proteins are plant mitochondrial editing factors., Nucleic acids research, 2015. [PMID=25800738]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Position Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT5G54580 Mitochondrion ccmB 406 CDS NA NA NA NA C-to-U CUG=>UUG L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq24.00%LowDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq26.00%LowDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion ccmB 80 CDS NA NA NA NA C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq47.00%MediumDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq71.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion ccmC 184 CDS NA NA NA NA C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq76.00%HighDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq71.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion ccmC 270 CDS NA NA NA NA C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq6.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq8.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion ccmC 463 CDS NA NA NA NA C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq79.00%HighDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq83.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion ccmC 618 CDS NA NA NA NA C-to-U ACC=>ACU T=>T Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq71.00%HighDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq70.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion ccmFc 1215 CDS NA NA NA NA C-to-U ACC=>ACU T=>T Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq52.00%MediumDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq60.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion ccmFc 315 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq0.00%UneditedDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion ccmFc 406 CDS NA NA NA NA C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq53.00%MediumDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq74.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion cob 114 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion mttB 59 CDS NA NA NA NA C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq77.00%HighDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq79.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad2 336 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad3 26 CDS NA NA NA NA C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq78.00%HighDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq79.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad4 1101 CDS NA NA NA NA C-to-U UAC=>UAU Y=>Y Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq57.00%MediumDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq59.00%MediumDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad4 1131 CDS NA NA NA NA C-to-U CUC/CUC=>CUU/UUU L=>L/F Synonymous/Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad4 1194 CDS NA NA NA NA C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq6.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad5 1494 CDS NA NA NA NA C-to-U CUC=>CUU L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad5 1933 CDS NA NA NA NA C-to-U CUA=>UUA L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad5 NA Intron NA NA Genomic position 141966 C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq7.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq18.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad6 NA 5'UTR NA NA NA 73
-73
C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq40.00%MediumDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq60.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad7 213 CDS NA NA NA NA C-to-U GAC=>GAU D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq78.00%HighDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq86.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad7 795 CDS NA NA NA NA C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq26.00%LowDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq39.00%LowDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad7 963 CDS NA NA NA NA C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq57.00%MediumDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq85.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad7 NA Intron NA NA Genomic position 134282
134309
C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq76.00%HighDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq86.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion nad9 517 CDS NA NA NA NA C-to-U CAA=>UAA Q=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion orf114 327 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq45.00%MediumDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq44.00%MediumDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion pseudo-rps14 99 CDS NA NA NA NA C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq7.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion rpl16 NA 3'UTR NA NA NA 72 C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus-induced gene silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq0.00%UneditedDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion rpl5 59 CDS NA NA NA NA C-to-U CCG/CCG=>CUG/UUG P=>L/L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq46.00%MediumDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq70.00%HighDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion rps12 328 CDS NA NA NA NA C-to-U CGA=>UGA R=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq0.00%UneditedDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion rps3 1344 CDS NA NA NA NA C-to-U AGC=>AGU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq14.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq17.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion rps3 270 CDS NA NA NA NA C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion rps4 711 CDS NA NA NA NA C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
Arabidopsis thaliana AT5G54580 Mitochondrion rps7 NA 5'UTR NA NA NA -217 C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM2 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq11.00%PoorDecreased25800738
NAORRM2 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq13.00%PoorDecreased25800738
Solanum lycopersicum Solyc07g063900 Mitochondrion atp4 171 CDS https://solgenomics.net NC_035963.1 Genomic position 49205 C-to-U NA=>NA F=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq9.29%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq15.20%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion atp6 606 CDS https://solgenomics.net NC_035963.1 Genomic position 425738 C-to-U NA=>NA F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq43.74%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq55.29%MediumIncreased38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion atp8 249 CDS https://solgenomics.net NC_035963.1 Genomic position 56948 C-to-U NA=>NA F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq8.93%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq10.75%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion atp8 30 CDS https://solgenomics.net NC_035963.1 Genomic position 56729 C-to-U NA=>NA F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq38.97%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq34.68%LowSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion atp9 229 CDS https://solgenomics.net NC_035963.1 Genomic position 409839 C-to-U NA=>NA R=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq9.46%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq5.29%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion atp9 81 CDS https://solgenomics.net NC_035963.1 Genomic position 409987
235336
C-to-U NA=>NA V=>V Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq84.20%HighNone38668628
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq36.73%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq75.10%HighSimilar38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq32.74%LowSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion ccmB 338 CDS https://solgenomics.net NC_035963.1 Genomic position 204832 C-to-U NA=>NA P=>Q Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq16.96%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq13.82%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion ccmB 569 CDS https://solgenomics.net NC_035963.1 Genomic position 204601 C-to-U NA=>NA S=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq7.86%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq5.60%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion ccmB 87 CDS https://solgenomics.net NC_035963.1 Genomic position 205083 C-to-U NA=>NA I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq5.07%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq3.03%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion ccmFc 1160 CDS https://solgenomics.net NC_035963.1 Genomic position 102187 C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq30.25%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq26.77%LowSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion ccmFc 1239 CDS https://solgenomics.net NC_035963.1 Genomic position 102266 C-to-U NA=>NA I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq9.87%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq7.34%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion ccmFc 406 CDS https://solgenomics.net NC_035963.1 Genomic position 100484 C-to-U NA=>NA R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq19.99%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq16.41%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion ccmFc 52 CDS https://solgenomics.net NC_035963.1 Genomic position 100130 C-to-U NA=>NA R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq16.38%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq13.43%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion ccmFc 707 CDS https://solgenomics.net NC_035963.1 Genomic position 100785 C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq22.53%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq19.24%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion cob 53 CDS https://solgenomics.net NC_035963.1 Genomic position 74624 C-to-U NA=>NA T=>I Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq53.71%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq47.42%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion cox1 1433 CDS https://solgenomics.net NC_035963.1 Genomic position 316820 C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq72.35%HighNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq79.94%HighSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion cox1 1489 CDS https://solgenomics.net NC_035963.1 Genomic position 316876 C-to-U NA=>NA P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq69.10%HighNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq76.82%HighSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion cox1 15 CDS https://solgenomics.net NC_035963.1 Genomic position 315402 C-to-U NA=>NA V=>V Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq34.71%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq42.67%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion cox1 590 CDS https://solgenomics.net NC_035963.1 Genomic position 315977 C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq67.93%HighNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq74.81%HighSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion cox1 761 CDS https://solgenomics.net NC_035963.1 Genomic position 316148 C-to-U NA=>NA S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq67.20%HighNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq74.23%HighSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion mttB 592 CDS https://solgenomics.net NC_035963.1 Genomic position 171871 C-to-U NA=>NA R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq7.46%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq5.56%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad4 1152 CDS https://solgenomics.net NC_035963.1 Genomic position 310858 C-to-U NA=>NA S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq26.77%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq29.99%LowSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad4 261 CDS https://solgenomics.net NC_035963.1 Genomic position 305425 C-to-U NA=>NA D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq20.71%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq15.60%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad4 74 CDS https://solgenomics.net NC_035963.1 Genomic position 305238 C-to-U NA=>NA T=>I Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq30.54%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq23.89%LowSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad4 837 CDS https://solgenomics.net NC_035963.1 Genomic position 307412 C-to-U NA=>NA S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq11.88%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq15.70%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad4 952 CDS https://solgenomics.net NC_035963.1 Genomic position 307527 C-to-U NA=>NA L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq16.99%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq20.84%LowSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad6 569 CDS https://solgenomics.net NC_035963.1 Genomic position 290822 C-to-U NA=>NA S=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq38.33%LowNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq45.01%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad7 24 CDS https://solgenomics.net NC_035963.1 Genomic position 358231 C-to-U NA=>NA I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq9.01%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq12.57%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad9 567 CDS https://solgenomics.net NC_035963.1 Genomic position 215429 C-to-U NA=>NA D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq5.63%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq3.51%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion nad9 92 CDS https://solgenomics.net NC_035963.1 Genomic position 214954 C-to-U NA=>NA S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq40.02%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq34.10%LowSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rpl5 47 CDS https://solgenomics.net NC_035963.1 Genomic position 42591 C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq56.15%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq47.72%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rpl5 503 CDS https://solgenomics.net NC_035963.1 Genomic position 43047 C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq62.01%HighNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq54.51%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rpl5 506 CDS https://solgenomics.net NC_035963.1 Genomic position 43050 C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq61.24%HighNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq54.54%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rpl5 59 CDS https://solgenomics.net NC_035963.1 Genomic position 42603 C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq56.70%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq48.50%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rpl5 92 CDS https://solgenomics.net NC_035963.1 Genomic position 42636 C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq56.20%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq49.29%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rps10 302 CDS https://solgenomics.net NC_035963.1 Genomic position 315164 C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq61.38%HighNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq52.67%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rps10 43 CDS https://solgenomics.net NC_035963.1 Genomic position 314130 C-to-U NA=>NA P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq15.06%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq12.35%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rps13 100 CDS https://solgenomics.net NC_035963.1 Genomic position 375537 C-to-U NA=>NA R=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq41.95%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq33.18%LowSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rps13 287 CDS https://solgenomics.net NC_035963.1 Genomic position 375350 C-to-U NA=>NA S=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq59.30%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq53.21%MediumSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rps13 60 CDS https://solgenomics.net NC_035963.1 Genomic position 375577 C-to-U NA=>NA T=>T Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq16.11%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq19.41%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion rps4 917 CDS https://solgenomics.net NC_035963.1 Genomic position 292218 C-to-U NA=>NA S=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq11.85%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq8.56%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion sdh3 235 CDS https://solgenomics.net NC_035963.1 Genomic position 221400 C-to-U NA=>NA L=>M Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq6.21%PoorNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq3.42%PoorSimilar38668628
Solanum lycopersicum Solyc07g063900 Mitochondrion sdh4 353 CDS https://solgenomics.net NC_035963.1 Genomic position 58880 C-to-U NA=>NA S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
S. lycopersicum cv. Micro-TomWTControlControlNo mutantNormalStyle5 DAPStrand-specific RNA-Seq44.54%MediumNone38668628
NACR-slorrm2CRISPR/Cas9-mediated gene editingA 9 bp deletion in both allelesKnockoutThe styles near the ovary of the CR-slorrm2 mutant on the day of pollination had much fewer glandular hairs compared to those of the WT; Scanning electron microscopy (SEM) images of the style and ovary of WT and CR-slorrm2, further showed the reduced trichomes in the styles of CR-slorrm2; Many of the cells of the style in the WT plants displayed a “funiculose” morphology, whereas only the cells of CR-slorrm2 style that were adjacent to the stigma differentiated into a funiculose cells; A noticeable displacement of the “separation zone” between the style and ovary in the CR-slorrm2 mutant, with the style being shifted away from the ovaryStyle5 DAPStrand-specific RNA-Seq49.82%MediumSimilar38668628
Last update: Feb 2026 (version 2.0)