YL - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: YL
Synonym: Organelle RNA Recognition Motif-Containing Protein 1
Description: YL is mainly expressed in trifoliate leaves, and its deficiency affects the editing of multiple chloroplast RNA sites, leading to inferior photosynthesis in soybean
Protein Family: ORRM
Subclass: NA
Physical Interaction: NA
Construct Structure: NA
Gene ID & Species: Glyma.20G187000 (Glycine max)
Edited Gene(s): accD    atpF    clpP    ndhA    ndhB    ndhC    ndhD    ndhE    ndhF    petB    psaI    psbE    psbF    psbL    rpl23    rpoA    rpoB    rpoC1    rps2    rps12    rps14    rps16    rps18
Editing Type(s): C-to-U (88)    G-to-A (2)
Publication(s): [1] Mutation of YL Results in a Yellow Leaf with Chloroplast RNA Editing Defect in Soybean., International journal of molecular sciences, 2020. [PMID=32560081]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Position Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Glycine max Glyma.20G187000 Chloroplast accD NA CDS NA DQ312375.1 Genomic position 202197
140870
C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)91.24%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)84.50%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast atpF NA CDS NA DQ312375.1 Genomic position 373365
140997
C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)97.73%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)96.59%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast clpP NA CDS NA DQ312375.1 Genomic position 65500
140811
C-to-U CAU=>UAU H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)94.65%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)55.73%MediumDecreased32560081
Glycine max Glyma.20G187000 Chloroplast ndhA NA CDS NA DQ312375.1 Genomic position 374905
373322
140985
140880
C-to-U UCA=>UUA
UCU=>UUU
S=>L
S=>F
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)91.29%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)90.65%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)94.00%HighSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)90.79%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast ndhB NA CDS NA DQ312375.1 Genomic position 373358
373366
374940
373278
373321
376398
373223
112249
50038
376407
112041
140630
140631
140646
140901
140670
148284
214776
150866
151106
150887
151036
G-to-A,C-to-U UGG=>UGA
UCA=>UUA
ACG=>AUG
CAU=>UAU
CCA=>CUA
UCU=>UUU
W=>Stop codon
S=>L
T=>M
H=>Y
P=>L
S=>F
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)96.00%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)91.58%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)98.41%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)99.43%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)99.62%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)96.83%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)99.72%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)96.43%HighSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)20.27%LowDecreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)6.12%PoorDecreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)43.79%MediumDecreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)46.27%MediumDecreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)98.56%HighSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)100.00%CompleteSimilar32560081
Glycine max Glyma.20G187000 Chloroplast ndhC NA CDS NA DQ312375.1 Genomic position 109965
150878
C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)95.69%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)97.96%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast ndhD NA CDS NA DQ312375.1 Genomic position 216643
63971
64024
220707
64976
152844
151324
65720
151325
151006
C-to-U ACG=>AUG
ACA=>AUA
UCA=>UUA
T=>M
T=>I
S=>L
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)55.28%MediumNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)91.59%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)89.37%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)84.02%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)87.76%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)55.85%MediumSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)92.95%HighSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)4.52%PoorDecreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)31.61%LowDecreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)94.40%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast ndhE NA CDS NA DQ312375.1 Genomic position 50958
151040
C-to-U CCG=>CUG P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)89.75%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)84.86%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast ndhF NA CDS NA DQ312375.1 Genomic position 219480
30274
C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)58.29%MediumNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)73.44%HighIncreased32560081
Glycine max Glyma.20G187000 Chloroplast petB NA CDS NA DQ312375.1 Genomic position 219395
304146
C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)99.05%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)18.11%PoorDecreased32560081
Glycine max Glyma.20G187000 Chloroplast psaI NA CDS NA DQ312375.1 Genomic position 219206
30204
C-to-U CAU=>UAU H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)94.50%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)87.78%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast psbE NA CDS NA DQ312375.1 Genomic position 219342
110776
C-to-U UCC=>UUC S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)99.70%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)99.65%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast psbF NA CDS NA DQ312375.1 Genomic position 219336
219347
303939
30861
C-to-U ACC=>ACU
UCU=>UUU
T=>T
S=>F
Synonymous
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)85.31%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)94.51%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)92.47%HighSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)93.11%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast psbL NA CDS NA DQ312375.1 Genomic position 375744
151354
C-to-U ACG=>AUG T=>M Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)89.99%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)46.14%MediumDecreased32560081
Glycine max Glyma.20G187000 Chloroplast rpl23 NA CDS NA DQ312375.1 Genomic position 219180
43370
C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldSanger sequencing77.78%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldSanger sequencing22.22%LowDecreased32560081
Glycine max Glyma.20G187000 Chloroplast rpoA NA CDS NA DQ312375.1 Genomic position 219275
148038
C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)73.01%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)72.23%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast rpoB NA CDS NA DQ312375.1 Genomic position 219362
219302
65814
219451
30958
304056
55934
303816
C-to-U UCU=>UUU
UCA=>UUA
UCG=>UUG
S=>F
S=>L
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)68.18%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)39.88%LowNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)37.50%LowNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)86.90%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)66.84%HighSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)0.00%UneditedAbsent32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)57.02%MediumIncreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)37.27%LowDecreased32560081
Glycine max Glyma.20G187000 Chloroplast rpoC1 NA CDS NA DQ312375.1 Genomic position 196184
196197
55639
214476
C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)96.22%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)47.25%MediumNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)97.99%HighSimilar32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)51.48%MediumSimilar32560081
Glycine max Glyma.20G187000 Chloroplast rps12 NA Intron NA DQ312375.1 Genomic position 191939
110369
C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)94.96%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)81.25%HighDecreased32560081
Glycine max Glyma.20G187000 Chloroplast rps14 NA CDS NA DQ312375.1 Genomic position 142177
304386
C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)86.11%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)89.10%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast rps16 NA Intron
CDS
NA DQ312375.1 Genomic position 43692
141107
150933
195627
C-to-U NA=>NA
UCA=>UUA
NA=>NA
S=>L
NA
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)73.14%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)95.79%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)11.92%PoorDecreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)91.91%HighSimilar32560081
Glycine max Glyma.20G187000 Chloroplast rps18 NA CDS NA DQ312375.1 Genomic position 140514
195368
C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)84.36%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)73.84%HighDecreased32560081
Glycine max Glyma.20G187000 Chloroplast rps2 NA CDS NA DQ312375.1 Genomic position 57539
172194
55904
55901
C-to-U ACA=>AUA
UCA=>UUA
T=>I
S=>L
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)96.87%HighNone32560081
NAWTControlControlControlNormalLeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)98.56%HighNone32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)35.50%LowDecreased32560081
NAylPoint mutationA C to A transition at the eighth exon of Glyma.20G187000NAConspicuous yellow leaves, decreased chlorophyll accumulation, lower PS II activity, an impaired net photosynthesis rate, and an altered chloroplast ultrastructure.LeafFive-week-oldDNA resequencing and RNA sequencing (RNA-seq)57.81%MediumDecreased32560081
Last update: Feb 2026 (version 2.0)