Solanum lycopersicum - Plant Editosome Database - BIG Data Center

Summary

Species: Solanum lycopersicum
NCBI Taxonomy: 4081
Organelle:Chloroplast (NC_007898.3,AM087200.3); Mitochondrion (NC_035963.1)
Editing Factors:2 (ORRM4, SlORRM4)
Edited Genes:20
Editing Events:126
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpF312266
12266
12266
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
CCA=>CUA
P=>L
P=>L
P=>L
ndhA6121864
121132
121864
121132
121864
121132
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCC=>UUC
UCA=>UUA
UCC=>UUC
UCA=>UUA
UCC=>UUC
S=>L
S=>F
S=>L
S=>F
S=>L
S=>F
ndhB27142204
142522
142641
142666
142792
142801
142885
142891
143536
142204
142522
142641
142666
142792
142801
142885
142891
143536
142204
142522
142641
142666
142792
142801
142885
142891
143536
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
CAU=>UAU
UCA=>UUA
CCA=>CUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
CCA=>CUA
UCA=>UUA
CCA=>CUA
CAU=>UAU
UCA=>UUA
CCA=>CUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
CCA=>CUA
UCA=>UUA
CCA=>CUA
CAU=>UAU
UCA=>UUA
CCA=>CUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
CCA=>CUA
S=>L
P=>L
H=>Y
S=>L
P=>L
S=>F
S=>L
S=>L
P=>L
S=>L
P=>L
H=>Y
S=>L
P=>L
S=>F
S=>L
S=>L
P=>L
S=>L
P=>L
H=>Y
S=>L
P=>L
S=>F
S=>L
S=>L
P=>L
ndhD21118442
118445
117848
117773
117569
117149
117137
118442
118445
117848
117773
117569
117149
117137
118442
118445
117848
117773
117569
117149
117137
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
UCA=>UUA
UCG=>UUG
UCA=>UUA
UCA=>UUA
CCA=>CUA
ACG=>AUG
ACG=>AUG
UCA=>UUA
UCG=>UUG
UCA=>UUA
UCA=>UUA
CCA=>CUA
ACG=>AUG
ACG=>AUG
UCA=>UUA
UCG=>UUG
UCA=>UUA
UCA=>UUA
CCA=>CUA
T=>M
T=>M
S=>L
S=>L
S=>L
S=>L
P/S=>L
T=>M
T=>M
S=>L
S=>L
S=>L
S=>L
P/S=>L
T=>M
T=>M
S=>L
S=>L
S=>L
S=>L
P/S=>L
ndhF3113432
113432
113432
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
ndhG3120071
120071
120071
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCG=>UUG
UCG=>UUG
S=>L
S=>L
S=>L
petB378203
78203
78203
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
CCA=>CUA
P=>L
P=>L
P=>L
psbE366481
66481
66481
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCA=>UCA
CCA=>UCA
CCA=>UCA
P=>S
P=>S
P=>S
psbL666172-66288
66290
66172-66288
66290
66172-66288
66290
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
NA
C-to-U
NA
C-to-U
NA
C-to-U
ACG=>AUG
ACG=>AUG
ACG=>AUG
ACG=>AUG
ACG=>AUG
ACG=>AUG
NA=>M
T=>M
NA=>M
T=>M
NA=>M
T=>M
rpl20370522
70522
70522
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
rpoA380030
80030
80030
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
rpoB1526764
26629
26551
25102
24676
26764
26629
26551
25102
24676
26764
26629
26551
25102
24676
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
UCU=>UUU
UCA=>UUA
S=>F
S=>L
S=>L
S=>F
S=>L
S=>F
S=>L
S=>L
S=>F
S=>L
S=>F
S=>L
S=>L
S=>F
S=>L
rpoC1323085
23085
23085
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
rpoC2317197
17197
17197
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
rps123141580
141580
141580
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
rps14337894
37894
37894
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
rps2616402
16288
16402
16288
16402
16288
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACA=>AUA
UCA=>UUA
ACA=>AUA
UCA=>UUA
ACA=>AUA
UCA=>UUA
T=>I
S=>L
T=>I
S=>L
T=>I
S=>L

( NA = Data Not Available )

Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
cox13315388-316971
315388-316971
315388-316971
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps106314088-314337
315113-315225
314088-314337
315113-315225
314088-314337
315113-315225
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps43292085-293134
292085-293134
292085-293134
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)