Solanum lycopersicum - Plant Editosome Database - CNCB-NGDC

Summary

Species: Solanum lycopersicum
NCBI Taxonomy: 4081
Organelle:Chloroplast (NC_007898.3,AM087200.3); Mitochondrion (NC_035963.1)
Editing Factors:4 (ORRM4, RIP1b, ORRM2, PPR138)
Edited Genes:20
Editing Sites:42
Gene Editing Sites Genomic Position Region Strand RNA Type Codons Amino Acids
atpF112266CDS-mRNAC-to-UCCA=>CUAP=>L
ndhA2121132
121864
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCC=>UUC
UCA=>UUA
S=>F
S=>L
ndhB9142204
142522
142641
142666
142792
142801
142885
142891
143536
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
CAU=>UAU
UCA=>UUA
CCA=>CUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
CCA=>CUA
S=>L
P=>L
H=>Y
S=>L
P=>L
S=>F
S=>L
S=>L
P=>L
ndhD7117137
117149
117569
117773
117848
118442
118445
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCA=>UUA
UCA=>UUA
UCG=>UUG
UCA=>UUA
ACG=>AUG
ACG=>AUG
P/S=>L
S=>L
S=>L
S=>L
S=>L
T=>M
T=>M
ndhF1113432CDS-mRNAC-to-UUCA=>UUAS=>L
ndhG1120071CDS-mRNAC-to-UUCG=>UUGS=>L
petB178203CDS+mRNAC-to-UCCA=>CUAP=>L
psbE166481CDS-mRNAC-to-UCCA=>UCAP=>S
psbL266172-66288
66290
CDS
CDS
-
-
mRNA
mRNA
NA
C-to-U
ACG=>AUG
ACG=>AUG
NA=>M
T=>M
rpl20170522CDS-mRNAC-to-UUCA=>UUAS=>L
rpoA180030CDS-mRNAC-to-UUCA=>UUAS=>L
rpoB524676
25102
26551
26629
26764
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
UCU=>UUU
S=>L
S=>F
S=>L
S=>L
S=>F
rpoC1123085CDS-mRNAC-to-UUCA=>UUAS=>L
rpoC2117197CDS-mRNAC-to-UUCA=>UUAS=>L
rps121141580CDS+mRNAC-to-UUCA=>UUAS=>L
rps14137894CDS-mRNAC-to-UUCA=>UUAS=>L
rps2216288
16402
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
ACA=>AUA
S=>L
T=>I

( NA = Data Not Available )

Gene Editing Sites Genomic Position Region Strand RNA Type Codons Amino Acids
cox11315388-316971CDS+mRNANANA=>NANA=>NA
rps102314088-314337
315113-315225
CDS
CDS
+
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps41292085-293134CDS-mRNANANA=>NANA=>NA

( NA = Data Not Available )

Last update: Sep 2026 (version 2.0)