Cocos nucifera - Plant Editosome Database - BIG Data Center

Summary

Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
accD457590
57953
57590
57953
CDS
CDS
CDS
CDS
+
+
+
+
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
UCG=>UUG
UCA=>UUA
S=>L
S=>L
S=>L
S=>L
atpA411067
10833
11067
10833
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
S=>L
atpB252589
52589
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
atpF212523
12523
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
P=>L
P=>L
atpI415324
15123
15324
15123
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>CUC
UCA=>UUA
CCC=>CUC
UCA=>UUA
P=>L
S=>L
P=>L
S=>L
clpP470137
69660
70137
69660
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
H=>Y
H=>Y
matK42396
1863
2396
1863
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UUC=>UUU
CAC=>UAC
UUC=>UUU
CAC=>UAC
D=>F
H=>Y
D=>F
H=>Y
ndhA8120809
120383
120293
119898
120809
120383
120293
119898
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
UCA=>UUA
CCU=>UCU
UCG=>UUG
UCA=>UUA
UCA=>UUA
CCU=>UCU
S=>L
S=>L
S=>L
P=>S
S=>L
S=>L
S=>L
P=>S
ndhB24140747
141065
141140
141184
141302
141335
141428
141434
141710
141791
141853
142079
140747
141065
141140
141184
141302
141335
141428
141434
141710
141791
141853
142079
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
ACG=>AUG
CAU=>UAU
UCC=>UUC
CCA=>CUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
CAU=>UAU
CCA=>CUA
UCA=>UUA
CCA=>CUA
ACG=>AUG
CAU=>UAU
UCC=>UUC
CCA=>CUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
CAU=>UAU
CCA=>CUA
S=>L
P=>L
T=>M
H=>Y
S=>F
P=>L
S=>L
S=>L
S=>L
S=>L
H=>Y
P=>L
S=>L
P=>L
T=>M
H=>Y
S=>F
P=>L
S=>L
S=>L
S=>L
S=>L
H=>Y
P=>L
ndhD14116755
116698
116374
116083
115810
115564
115447
116755
116698
116374
116083
115810
115564
115447
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACG=>AUG
UCA=>UUA
UCA=>UUA
UCG=>UUG
ACA=>AUA
UCA=>UUA
UCA=>UUA
ACG=>AUG
UCA=>UUA
UCA=>UUA
UCG=>UUG
ACA=>AUA
UCA=>UUA
UCA=>UUA
T=>M
S=>L
S=>L
S=>L
T=>I
S=>L
S=>L
T=>M
S=>L
S=>L
S=>L
T=>I
S=>L
S=>L
ndhF8112768
112540
112438
112388
112768
112540
112438
112388
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCC=>UUC
CAU=>UAU
UCA=>UUA
UCA=>UUA
UCC=>UUC
CAU=>UAU
S=>L
S=>L
S=>F
H=>Y
S=>L
S=>L
S=>F
H=>Y
ndhG2118458
118458
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
P=>L
P=>L
ndhH4122577
122537
122577
122537
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
UCU=>UUU
CAU=>UAU
UCU=>UUU
S=>L
S=>F
S=>L
S=>F
ndhK248875
48875
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCG=>UUG
UCG=>UUG
S=>L
S=>L
petB475833
76026
75833
76026
CDS
CDS
CDS
CDS
+
+
+
+
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
CGG=>UGG
CCA=>CUA
CGG=>UGG
CCA=>CUA
R=>W
P=>L
R=>W
P=>L
psaI459270
59275
59270
59275
CDS
CDS
CDS
CDS
+
+
+
+
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
CAU=>UAU
UCU=>UUU
CAU=>UAU
S=>F
H=>Y
S=>F
H=>Y
rpl2486006
152680
86006
152680
CDS
CDS
CDS
CDS
-
+
-
+
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
ACG=>AUG
ACG=>AUG
T=>M
T=>M
T=>M
T=>M
rpl234152168
152186
152168
152186
CDS
CDS
CDS
CDS
+
+
+
+
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCU=>UUU
S=>L
S=>F
S=>L
S=>F
rpoA878529
78361
78202
77899
78529
78361
78202
77899
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
UCC=>UUC
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCC=>UUC
UCA=>UUA
S=>F
S=>L
S=>F
S=>L
S=>F
S=>L
S=>F
S=>L
rpoB1226833
26755
26740
26683
25306
24880
26833
26755
26740
26683
25306
24880
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
UCG=>UUG
CCG=>CUG
UCU=>UUU
UCA=>UUA
UCG=>UUG
UCA=>UUA
UCG=>UUG
CCG=>CUG
UCU=>UUU
UCA=>UUA
S=>L
S=>L
S=>L
P=>L
S=>F
S=>L
S=>L
S=>L
S=>L
P=>L
S=>F
S=>L
rpoC1623261
22791
22685
23261
22791
22685
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CGG=>UGG
UCA=>UUA
CCA=>CUA
CGG=>UGG
UCA=>UUA
P=>L
R=>W
S=>L
P=>L
R=>W
S=>L
rpoC2218765
18765
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCG=>UUG
UCG=>UUG
S=>L
S=>L
rps14435736
35667
35736
35667
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
UCA=>UUA
CCA=>CUA
S=>L
P=>L
S=>L
P=>L
rps2416582
16468
16582
16468
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
ACA=>AUA
UCA=>UUA
ACA=>AUA
UCA=>UUA
T=>I
S=>L
T=>I
S=>L
rps3482935
82822
82935
82822
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
ACA=>AUA
CAU=>UAU
ACA=>AUA
CAU=>UAU
S=>L
S=>L
S=>L
S=>L
rps8280156
80156
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
ycf3841553
41412
41406
41190
41553
41412
41406
41190
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
ACG=>AUG
CCA=>CUA
UCC=>UUC
UCU=>UUU
ACG=>AUG
CCA=>CUA
UCC=>UUC
S=>F
T=>M
P=>L
S=>F
S=>F
T=>M
P=>L
S=>F
ycf4259915
59915
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L

( NA = Data Not Available )

Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
nad18428751-429005
519098-519355
372952-373335
430433-430516
428751-429005
519098-519355
372952-373335
430433-430516
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
NA
NA
NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)