Schizaea pectinata - Plant Editosome Database - BIG Data Center

Summary

Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
accD245188
45334
CDS
CDS
+
+
mRNA
mRNA
C-to-U
U-to-C
ACG=>AUG
UGA=>CGA
T=>M
TERM=>R
atpA24640
3219-4742
NA
CDS
+
-
Unanotated Transcript
mRNA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
atpB240813-42285
42284
CDS
NA
-
+
mRNA
Unanotated Transcript
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
atpF34791-5200
5880-6024
6023
CDS
CDS
NA
-
-
+
mRNA
mRNA
Unanotated Transcript
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
atpH26245-6490
6489
CDS
NA
-
+
mRNA
Unanotated Transcript
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
atpI27925
7180-7926
NA
CDS
+
-
Unanotated Transcript
mRNA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
ccsA2127446
102166
NA
CDS
+
+
Unanotated Transcript
mRNA
U-to-C
U-to-C
NA=>NA
UAA=>CAA
NA=>NA
TERM=>Q
chlB6156060
156308
155928
73304
73552
73684
NA
NA
NA
CDS
CDS
CDS
+
+
+
+
+
+
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
mRNA
mRNA
mRNA
U-to-C
C-to-U
U-to-C
C-to-U
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
ACG=>AUG
UAA=>CAA
UGA=>CGA
NA=>NA
NA=>NA
NA=>NA
T=>M
TERM=>Q
TERM=>R
chlL2114857-115741
115740
CDS
NA
-
+
mRNA
Unanotated Transcript
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
chlN3113370
114713
113332-114714
NA
NA
CDS
+
+
-
Unanotated Transcript
Unanotated Transcript
mRNA
U-to-C
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
infA266241
66116-66361
NA
CDS
+
-
Unanotated Transcript
mRNA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
matK276748-78220
151392-152864
CDS
CDS
+
-
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
petA149796CDS+mRNAU-to-CUAG=>CAGTERM=>Q
petD162929CDS+mRNAC-to-UACG=>AUGT=>M
petN121359CDS+mRNAC-to-UACG=>AUGT=>M
psaA234391
32140-34392
NA
CDS
+
-
Unanotated Transcript
mRNA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
psaB231753
29912-32116
NA
CDS
+
-
Unanotated Transcript
mRNA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
psaC6104828
104762
104586
124784
125026
124850
NA
NA
NA
CDS
CDS
CDS
+
+
+
+
+
+
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
GCG=>GUG
CAA=>UAA
ACG=>AUG
NA=>NA
NA=>NA
NA=>NA
A=>V
Q=>TERM
T=>M
psaJ153602CDS+mRNAC-to-UACG=>AUGT=>M
psbB260137
58674
CDS
CDS
+
+
mRNA
mRNA
U-to-C
C-to-U
UAA=>CAA
ACG=>AUG
TERM=>Q
T=>M
psbE251548-51799
51748
CDS
NA
-
+
mRNA
Unanotated Transcript
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
psbL251280-51396
51282
CDS
NA
-
+
mRNA
Unanotated Transcript
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpl2471228-71664
72409-72805
72796
71230
CDS
CDS
NA
NA
-
-
+
+
mRNA
mRNA
Unanotated Transcript
Unanotated Transcript
NA
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpl322129318
100294
NA
CDS
+
+
Unanotated Transcript
mRNA
C-to-U
C-to-U
NA=>NA
ACG=>AUG
NA=>NA
T=>M
rpl36265944
65832-65945
NA
CDS
+
-
Unanotated Transcript
mRNA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpoA365014
65083
64316-65323
NA
NA
CDS
+
+
-
Unanotated Transcript
Unanotated Transcript
mRNA
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpoB716147-19344
19155
16149
16449
17613
19197
19116
CDS
NA
NA
NA
NA
NA
NA
-
+
+
+
+
+
+
mRNA
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
NA
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpoC1416114
16001
13244-14851
15684-16115
NA
NA
CDS
CDS
+
+
-
-
Unanotated Transcript
Unanotated Transcript
mRNA
mRNA
C-to-U
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpoC2611360
11882
13153
12440
12938
8979-13154
NA
NA
NA
NA
NA
CDS
+
+
+
+
+
-
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
mRNA
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps11365360-65755
65632
65754
CDS
NA
NA
-
+
+
mRNA
Unanotated Transcript
Unanotated Transcript
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps14229606
29376-29678
NA
CDS
+
-
Unanotated Transcript
mRNA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps152107535
122077
NA
CDS
+
+
Unanotated Transcript
mRNA
C-to-U
C-to-U
NA=>NA
ACG=>AUG
NA=>NA
T=>M
rps16368267-68671
69548-69556
69555
CDS
CDS
NA
-
-
+
mRNA
mRNA
Unanotated Transcript
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps228814
8105-8815
NA
CDS
+
-
Unanotated Transcript
mRNA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps3269748-70404
70374
CDS
NA
-
+
mRNA
Unanotated Transcript
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps4237124-37744
37743
CDS
NA
-
+
mRNA
Unanotated Transcript
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
ycf12107876-112789
116823-121736
CDS
CDS
-
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
ycf26134169
137247
135786
93826
92365
95443
NA
NA
NA
CDS
CDS
CDS
+
+
+
+
+
+
Unanotated Transcript
Unanotated Transcript
Unanotated Transcript
mRNA
mRNA
mRNA
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
UAA=>CAA
UGA=>CGA
UAA=>CAA
NA=>NA
NA=>NA
NA=>NA
TERM=>Q
TERM=>R
TERM=>Q
ycf4147171CDS+mRNAC-to-UACG=>AUGT=>M

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)