Plant
Editosome
Database
Summary
| Species: | Lepisorus clathratus |
| NCBI Taxonomy: | 253749 |
| Organelle: | Chloroplast (NC_035739.1) |
| Edited Genes: | 44 |
| Editing Sites: | 110 |
| Gene | Editing Sites | Genomic Position | Region | Strand | RNA | Type | Codons | Amino Acids |
|---|---|---|---|---|---|---|---|---|
| accD | 1 | 53566 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| atpA | 2 | 10285 8864-10387 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| atpH | 2 | 12103-12348 12347 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| atpI | 3 | 13071-13817 13748 13816 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ccsA | 1 | 112838 | CDS | + | mRNA | C-to-U | ACA=>AUA | T=>I |
| chlB | 3 | 3631-5175 4794 4926 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| chlL | 3 | 129071-129952 129229 129951 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| infA | 2 | 74567-74809 74689 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| matK | 3 | 1495 242-1759 247 | NA CDS NA | + - + | Unanotated Transcript mRNA Unanotated Transcript | U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ndhB | 2 | 154682-155446 156302-157039 | CDS CDS | - - | mRNA mRNA | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhC | 2 | 46983-47345 46985 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhF | 4 | 108154-110385 109749 110025 110384 | CDS NA NA NA | - + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C C-to-U | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| ndhI | 2 | 117574-118068 117588 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| Novel | 1 | 40 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| petA | 2 | 58084 58093 | CDS CDS | + + | mRNA mRNA | U-to-C U-to-C | UAG=>UCG UAA=>UCA | TERM=>S TERM=>S |
| petB | 1 | 71178 | CDS | + | mRNA | C-to-U | CAA=>UAA | Q=>TERM |
| petD | 1 | 71384 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| petN | 2 | 28131-28220 28219 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psaB | 2 | 35666-37870 37869 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbB | 1 | 67132 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| psbC | 1 | 30572-31993 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbD | 1 | 31992 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| psbH | 1 | 69359 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| psbJ | 2 | 59242-59370 59250 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpl16 | 3 | 76156-76560 77319-77327 77326 | CDS CDS NA | - - + | mRNA mRNA Unanotated Transcript | NA NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpl2 | 4 | 78907-79343 79284 80052-80448 80439 | CDS NA CDS NA | - + - + | mRNA Unanotated Transcript mRNA Unanotated Transcript | NA U-to-C NA U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rpl21 | 1 | 110996 | CDS | + | mRNA | U-to-C | UGA=>UGC | TERM=>C |
| rpl22 | 2 | 78200-78577 78331 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpl23 | 2 | 80517-80783 80782 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpl36 | 2 | 74327-74440 74439 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpoB | 7 | 22216-25431 23001 23700 23748 24714 25203 25305 | CDS NA NA NA NA NA NA | - + + + + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC1 | 4 | 19325-20974 19387 21737-22168 22054 | CDS NA CDS NA | - + - + | mRNA Unanotated Transcript mRNA Unanotated Transcript | NA U-to-C NA U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC2 | 2 | 14872-19152 18921 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps11 | 2 | 73865-74257 74137 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps15 | 2 | 121562-121831 121830 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps16 | 5 | 2428-2661 2643 2649 3448-3489 3488 | CDS NA NA CDS NA | - + + - + | mRNA Unanotated Transcript Unanotated Transcript mRNA Unanotated Transcript | NA U-to-C U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rps2 | 4 | 14033-14749 14233 14320 14356 | CDS NA NA NA | - + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rps3 | 2 | 77438-78094 78049 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps4 | 2 | 43196-43816 43615 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps7 | 2 | 139867 98226 | NA CDS | + + | Unanotated Transcript mRNA | U-to-C U-to-C | NA=>NA UAA=>UCA | NA=>NA TERM=>S |
| ycf1 | 4 | 122143-127245 122145 126285 127244 | CDS NA NA NA | - + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C C-to-U | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| ycf2 | 10 | 101027 102172 102385 104431 105328 132765 133662 135708 135921 137067 | CDS CDS CDS CDS CDS NA NA NA NA NA | + + + + + + + + + + | mRNA mRNA mRNA mRNA mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript | U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C | UGA=>UGC UAA=>UCA UAA=>UCA UAA=>UCA UAA=>UCA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | TERM=>C TERM=>S TERM=>S TERM=>S TERM=>S NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| ycf3 | 4 | 40482-40643 41290-41518 41478 42263-42387 | CDS CDS NA CDS | - - + - | mRNA mRNA Unanotated Transcript mRNA | NA NA U-to-C NA | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| ycf4 | 1 | 55366 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
( NA = Data Not Available )
Last update: Sep 2026
(version 2.0)