LncRNAWiki:Featured
Revision as of 09:41, 24 June 2016 by Chunlei Yu (talk | contribs)
| Name | Transcript ID | Alias | Description |
|---|---|---|---|
| FAM3D-AS1 | FAM3D-AS1 | lnc-KCTD6-3 | FAM3D antisense RNA 1 |
| SHANK2-AS3 | SHANK2-AS3 | N/A | SHANK2 antisense RNA 3 |
| 21A | NONHSAT128494 | ncRNA 21A | N/A |
| 7SK | NONHSAT113149 | 7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198 | RNA, 7SK small nuclear |
| 7SL | lnc-LRR1-1:1 | 7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486 | RNA, 7SL, cytoplasmic 1 |
| AATBC | AATBC | N/A | apoptosis associated transcript in bladder cancer |
| ABALON | ABALON | INXS | apoptotic BCL2L1-antisense long non-coding RNA |
| ABHD11-AS1 | ABHD11-AS1 | NCRNA00035 | ABHD11 antisense RNA 1 (tail to tail) |
| ABHD15-AS1 | ABHD15-AS1 | linc-TP53I13, lnc-TP53I13 | ABHD15 antisense RNA 1 |
| ACTA2-AS1 | ACTA2-AS1 | uc001kfo.1, ZXF1 | ACTA2 antisense RNA 1 |
| ADAMTS9-AS2 | ADAMTS9-AS2 | N/A | ADAMTS9 antisense RNA 2 |
| ADORA2A-AS1 | ADORA2A-AS1 | FLJ34651 | ADORA2A antisense RNA 1 |
| AFAP1-AS1 | AFAP1-AS1 | MGC10981 | AFAP1 antisense RNA 1 |
| AGAP2-AS1 | AGAP2-AS1 | LOC100130776, PUNISHER | AGAP2 antisense RNA 1 |
| AIRN | ENST00000609176.1 | AIRN, AIRN, IGF2RAS | Antisense of IGF2R non-protein coding RNA |
| Alpha 250/Alpha 280 | NONHSAT104559,lnc-NDST1-1:2 | N/A | N/A |
| ANP32A-IT1 | ANP32A-IT1 | FLJ11722, HsT18971 | ANP32A intronic transcript 1 |
| APOA1-AS | ENST00000444200.1 | APOA1 antisense RNA | N/A |
| APTR | NONHSAT121673 | Alu-mediated CDKN1A/p21 | N/A |
| ARRDC1-AS1 | ARRDC1-AS1 | N/A | ARRDC1 antisense RNA 1 |
| ASAP1-IT1 | ASAP1-IT1 | HSPC054, NCRNA00050, ASAP1IT, ASAP1-IT | ASAP1 intronic transcript 1 |
| ASMTL-AS1 | ASMTL-AS1 | FLJ13330 | ASMTL antisense RNA 1 |
| ATP1A1-AS1 | ATP1A1-AS1 | MGC16179 | ATP1A1 antisense RNA 1 |
| ATXN8OS | NONHSAT034251 | NCRNA00003, non-protein coding RNA 3, ATXN8OS, KLHL1AS, SCA8, ENSG00000230223 | Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand |
| B3GALT5-AS1 | B3GALT5-AS1 | N/A | B3GALT5 antisense RNA 1 |
| B4GALT1-AS1 | B4GALT1-AS1 | N/A | B4GALT1 antisense RNA 1 |
| BAALC-AS2 | BAALC-AS2 | MGC39526 | BAALC antisense RNA 2 |
| BACE1-AS | NONHSAT024403,lnc-RNF214-1:2 | BACE1AS,NCRNA00177; FJ573250 | BACE1 antisense RNA |
| BANCR | Lnc-APBA1-3:1 | LINC00586 | BRAF-activated non-protein coding RNA |
| BCAR4 | BCAR4 | N/A | breast cancer anti-estrogen resistance 4 (non-protein coding) |
| BCYRN1 | lnc-EPCAM-1:2 | BC200,BC200a, NCRNA00004, LINC00004 | BCYRN1, brain cytoplasmic RNA 1 |
| BDNF-AS | ENST00000499008.3 | BDNF antisense RNA | BT2A, BT2B,BT2C,BT2D,NCRNA00049,BDNF-AS1, NCRNA00049 |
| Beta-globin transcripts | NONHSAT017676,NONHSAT017675,NONHSAT017674 | N/A | N/A |
| BFSP2-AS1 | BFSP2-AS1 | MGC2848 | BFSP2 antisense RNA 1 |
| BGLT3 | BGLT3 | LINC01083, BGL3, lncRNA-BGL3 | beta globin locus transcript 3 (non-protein coding) |
| BIN3-IT1 | BIN3-IT1 | FLJ14107 | BIN3 intronic transcript 1 |
| BIRC6-AS1 | BIRC6-AS1 | N/A | BIRC6 antisense RNA 1 |
| BIRC6-AS2 | BIRC6-AS2 | megamind | BIRC6 antisense RNA 2 |
| BISPR | BISPR | N/A | BST2 interferon stimulated positive regulator (non-protein coding) |
| BLACAT1 | BLACAT1 | linc-UBC1,LINC00912, onco-lncRNA-30 | bladder cancer associated transcript 1 (non-protein coding) |
| BOK-AS1 | BOK-AS1 | NCRNA00151, NAToB | BOK antisense RNA 1 |
| BPESC1 | ENST00000418282.1 | NCRNA00187 | blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) |
| BRWD1-AS2 | BRWD1-AS2 | N/A | BRWD1 antisense RNA 2 |
| C1QTNF9B-AS1 | C1QTNF9B-AS1 | PCOTH | C1QTNF9B antisense RNA 1 |
| C21orf91-OT1 | C21orf91-OT1 | D21S2089E | C21orf91 overlapping transcript 1 |
| C5orf66-AS1 | C5orf66-AS1 | CTC-276P9.1, Epist | C5orf66 antisense RNA 1 |
| C5orf66-AS2 | C5orf66-AS2 | N/A | C5orf66 antisense RNA 2 |
| C8orf34-AS1 | C8orf34-AS1 | N/A | C8orf34 antisense RNA 1 |
| CACNA1G-AS1 | CACNA1G-AS1 | N/A | CACNA1G antisense RNA 1 |
| CAHM | ENST00000604200.1 | LINC00468 | colon adenocarcinoma hypermethylated (non-protein coding) |
| CAPN10-AS1 | CAPN10-AS1 | locus959 | CAPN10 antisense RNA 1 (head to head) |
| CAR Intergenic 10 | NONHSAT016928,lnc-FANK1-3:1 | Intergenic10, CR611911, AK055628 | Chromatin Associated RNA 10 |
| CARD8-AS1 | CARD8-AS1 | LOC100505812 | CARD8 antisense RNA 1 |
| CARMN | CARMN | CARMEN | cardiac mesoderm enhancer-associated non-coding RNA |
| CASC11 | CASC11 | TCONSN/A00014535, LINC00990, CARLo-7 | cancer susceptibility candidate 11 (non-protein coding) |
| CASC15 | CASC15 | N/A | cancer susceptibility candidate 15 (non-protein coding) |
| CASC19 | CASC19 | CARLo-6 | cancer susceptibility candidate 19 (non-protein coding) |
| CASC2 | CASC2 | N/A | cancer susceptibility candidate 2 (non-protein coding) |
| CASC21 | CASC21 | CARLo-2 | cancer susceptibility candidate 21 (non-protein coding) |
| CASC22 | CASC22 | TCONSN/A00024290, LincRNA-ENST00000515084 | cancer susceptibility candidate 22 (non-protein coding) |
| CASC8 | CASC8 | LINC00860,CARLo-1 | cancer susceptibility candidate 8 (non-protein coding) |
| CASC9 | CASC9 | LINC00981, ESCCAL-1 | cancer susceptibility candidate 9 (non-protein coding) |
| CBR3-AS1 | CBR3-AS1 | PlncRNA-1 | CBR3 antisense RNA 1 |
| CCAT1 | NONHSAT129017 | CARLo-5, onco-lncRNA-40 | colon cancer associated transcript 1 (non-protein coding) |
| CCAT2 | CCAT2 | NCCP1, LINC00873 | colon cancer associated transcript 2 (non-protein coding) |
| CCDC18-AS1 | CCDC18-AS1 | ENST00000440778.1 | CCDC18 antisense RNA 1 |
| CCDC26 | CCDC26 | MGC27434, RAM | CCDC26 long non-coding RNA |
| CCEPR | CCEPR | CCHE1 | cervical carcinoma expressed PCNA regulatory lncRNA |
| CDKN1A-AS1 | CDKN1A-AS1 | p21NAT | CDKN1A antisense RNA 1 |
| CDKN2B-AS1 | NONHSAT130421,lnc-C9orf53-2:1 | ANRIL, p15AS, ENSG00000240498 | CDKN2B antisense RNA 1 |
| CDR1-AS | CDR1-AS | CDR1NAT, ciRS-7, CDR1as | CDR1 antisense RNA |
| CDRT7 | CDRT7 | NCRNA00025, LINC00025 | CMT1A duplicated region transcript 7 (non-protein coding) |
| CDRT8 | CDRT8 | N/A | CMT1A duplicated region transcript 8 |
| CECR3 | CECR3 | N/A | cat eye syndrome chromosome region, candidate 3 (non-protein coding) |
| CECR5-AS1 | CECR5-AS1 | NCRNA00017 | CECR5 antisense RNA 1 |
| CECR7 | CECR7 | SAHL1 | cat eye syndrome chromosome region, candidate 7 (non-protein coding) |
| CECR9 | CECR9 | N/A | cat eye syndrome chromosome region, candidate 9 (non-protein coding) |
| CEP83-AS1 | CEP83-AS1 | N/A | CEP83 antisense RNA 1 (head to head) |
| CIRBP-AS1 | CIRBP-AS1 | MGC39338 | CIRBP antisense RNA 1 |
| CISTR | NONHSAT028496 | CISTR-ACT, CISTRACT, re52431 | chondrogenesis-associated transcript |
| CLRN1-AS1 | CLRN1-AS1 | UCRP | CLRN1 antisense RNA 1 |
| COPG2IT1 | COPG2IT1 | CIT1, NCRNA00170, COPG2AS | COPG2 imprinted transcript 1 (non-protein coding) |
| CPS1-IT1 | CPS1-IT1 | PRO0132, CPS1-IT | CPS1 intronic transcript 1 |
| CRNDE | Lnc-IRX3-4:2 | LOC643911, LINC00180, CRNDEP | colorectal neoplasia differentially expressed (non-protein coding) |
| CSNK1G2-AS1 | CSNK1G2-AS1 | MGC39696 | CSNK1G2 antisense RNA 1 |
| CSTF3-AS1 | CSTF3-AS1 | N/A | CSTF3 antisense RNA 1 (head to head) |
| CTBP1-AS | CTBP1-AS | PCAT10 | CTBP1 antisense RNA |
| CTBP1-AS2 | CTBP1-AS2 | MGC21675 | CTBP1 antisense RNA 2 (head to head) |
| CYP1B1-AS1 | CYP1B1-AS1 | MGC34824 | CYP1B1 antisense RNA 1 |
| CYP4A22-AS1 | ENST00000444042.2 | Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506 | CYP4A22 antisense RNA 1 |
| CYP51A1-AS1 | CYP51A1-AS1 | ENST00000453068, LRRD1-AS1 | CYP51A1 antisense RNA 1 |
| CYYR1-AS1 | ENST00000357401.3 | cysteine and tyrosine rich 1 antisense RNA 1 | N/A |
| DACOR1 | DACOR1 | TCONSN/A00023265 | DNMT1-associated colon cancer repressed lncRNA 1 |
| DALIR | DALIR | DALI | DNMT1-associated long intergenic non-coding RNA |
| DANCR | NONHSAT096369 | differentiation antagonizing non-protein coding RNA | ANCR, AGU2, lncRNA-ANCR |
| DANT1 | DANT1 | N/A | DXZ4 associated non-coding transcript 1, proximal |
| DANT2 | DANT2 | N/A | DXZ4 associated non-coding transcript 2, distal |
| DAOA-AS1 | DAOA-AS1 | G30 | DAOA antisense RNA 1 |
| DAPK1-IT1 | DAPK1-IT1 | N/A | DAPK1 intronic transcript 1 |
| DBET | NONHSAT099821 | DBE-T, DUX4L30 | D4Z4 binding element transcript (non-protein coding) |
| DBH-AS1 | DBH-AS1 | BPR | DBH antisense RNA 1 |
| DGCR10 | DGCR10 | DGS-B | DiGeorge syndrome critical region gene 10 (non-protein coding) |
| DGCR11 | DGCR11 | DGS-D | DiGeorge syndrome critical region gene 11 (non-protein coding) |
| DGCR12 | DGCR12 | DGS-E | DiGeorge syndrome critical region gene 12 (non-protein coding) |
| DGCR5 | DGCR5 | NCRNA00037, LINC00037 | DiGeorge syndrome critical region gene 5 (non-protein coding) |
| DGCR9 | DGCR9 | DGS-A, POM121L5P | DiGeorge syndrome critical region gene 9 (non-protein coding) |
| DHFR upstream transcripts | NONHSAT102417 | DHFR minor transcript 5'-UTR, ENSG00000228716 | N/A |
| DHRS4-AS1 | NONHSAT035954 | DHRS4 antisense RNA 1 | PRO1488,AS1DHRS4 |
| DIAPH2-AS1 | DIAPH2-AS1 | N/A | DIAPH2 antisense RNA 1 |
| DIO3OS | NONHSAT040032,NONHSAT040039 | DIO3-AS1, NCRNA00041, non-protein coding RNA 41, ENSG00000258498 | DIO3 opposite strand/antisense RNA (head to head) |
| DISC1FP1 | DISC1FP1 | N/A | DISC1 fusion partner 1 (non-protein coding) |
| DISC2 | NONHSAT010191 | DISC1-AS1, DISC1OS, NCRNA00015 | disrupted in schizophrenia 2 (non-protein coding) |
| DLEU1 | NONHSAT033797 | deleted in lymphocytic leukemia 1 (non-protein coding) | LEU1, XTP6, NCRNA00021, LINC00021, BCMS1 |
| DLEU2 | NONHSAT033821 | deleted in lymphocytic leukemia 2 (non-protein coding) | LEU2, TRIM13OS, NCRNA00022, LINC00022, MIR15AHG |
| DLG2-AS1 | DLG2-AS1 | PSZA11q14, SZ-1 | DLG2 antisense RNA 1 |
| DLGAP1-AS3 | DLGAP1-AS3 | N/A | DLGAP1 antisense RNA 3 |
| DLX6-AS1 | DLX6-AS1 | FLJ34048, Evf-2 | DLX6 antisense RNA 1 |
| DNM3OS | DNM3OS | MIR199A2HG, DNM3-AS1 | DNM3 opposite strand/antisense RNA |
| DRAIC | DRAIC | N/A | downregulated RNA in cancer, inhibitor of cell invasion and migration |
| DSCR10 | DSCR10 | N/A | Down syndrome critical region 10 (non-protein coding) |
| DSCR9 | DSCR9 | NCRNA00038 | Down syndrome critical region 9 (non-protein coding) |
| DUBR | DUBR | N/A | DPPA2 upstream binding RNA |
| EGFR-AS1 | EGFR-AS1 | N/A | EGFR antisense RNA 1 |
| EGOT | NONHSAT087635 | EGO, eosinophil granule ontogeny, NCRNA00190, non-protein coding RNA 190, ENSG00000235947 | Eosinophil granule ontogeny (EGO) RNA |
| ELFN1-AS1 | ELFN1-AS1 | N/A | ELFN1 antisense RNA 1 |
| EMX2OS | lnc-PDZD8-3:1 | EMX2-AS1, NCRNA00045, non-protein coding RNA 45,ENSG00000229847 | Emx2 opposite strand transcript. |
| ENTPD3-AS1 | ENTPD3-AS1 | FLJ36665 | ENTPD3 antisense RNA 1 |
| EPB41L4A-AS1 | EPB41L4A-AS1 | TIGA1 | EPB41L4A antisense RNA 1 |
| EPB41L4A-AS2 | EPB41L4A-AS2 | FLJ11235 | EPB41L4A antisense RNA 2 (head to head) |
| ERC2-IT1 | ERC2-IT1 | Po42 | ERC2 intronic transcript 1 |
| ERICD | Lnc-CHRAC1-2:1 | TCONS_00014875, ERIC | E2F1-regulated inhibitor of cell death (non-protein coding) |
| ERICH1-AS1 | ERICH1-AS1 | N/A | ERICH1 antisense RNA 1 |
| ESRG | ENST00000583516.1 | HESRG | embryonic stem cell related (non-protein coding) |
| Evf2 | lnc-DLX5-3:1 | Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764 | N/A |
| EWSAT1 | EWSAT1 | FLJ33768 | Ewing sarcoma associated transcript 1 |
| EXOC3-AS1 | EXOC3-AS1 | N/A | EXOC3 antisense RNA 1 |
| EXTL3-AS1 | EXTL3-AS1 | N/A | EXTL3 antisense RNA 1 |
| F11-AS1 | F11-AS1 | N/A | F11 antisense RNA 1 |
| FALEC | ENST00000416894.1 | LINC00568, long intergenic non-protein coding RNA 568, ENSG00000228126.1 | focally amplified long non-coding RNA in epithelial cancer |
| FAM138A | FAM138A | F379 | family with sequence similarity 138 member A |
| FAM138B | FAM138B | F379 | family with sequence similarity 138 member B |
| FAM138C | FAM138C | F379 | family with sequence similarity 138 member C |
| FAM138D | FAM138D | F379 | family with sequence similarity 138 member D |
| FAM138E | FAM138E | F379 | family with sequence similarity 138 member E |
| FAM138F | FAM138F | F379 | family with sequence similarity 138 member F |
| FAM13A-AS1 | FAM13A-AS1 | NCRNA00039 | FAM13A antisense RNA 1 |
| FAM201A | FAM201A | N/A | family with sequence similarity 201 member A |
| FAM215A | FAM215A | APR-2, LINC00530 | family with sequence similarity 215 member A (non-protein coding) |
| FAM222A-AS1 | FAM222A-AS1 | N/A | FAM222A antisense RNA 1 |
| FAM226A | FAM226A | MGC34827 | family with sequence similarity 226 member A (non-protein coding) |
| FAM226B | FAM226B | N/A | family with sequence similarity 226 member B (non-protein coding) |
| FAM27E3 | FAM27E3 | MGC42630 | family with sequence similarity 27 member E3 |
| FAM41AY1 | FAM41AY1 | N/A | family with sequence similarity 41 member A, Y-linked 1 |
| FAM41C | FAM41C | N/A | family with sequence similarity 41 member C |
| FAM66C | FAM66C | N/A | family with sequence similarity 66 member C |
| FAM74A3 | FAM74A3 | OTTHUMG00000067149 | family with sequence similarity 74 member A3 |
| FAM83H-AS1 | FAM83H-AS1 | onco-lncRNA-3 | FAM83H antisense RNA 1 (head to head) |
| FAM87A | FAM87A | N/A | family with sequence similarity 87 member A |
| FAS-AS | NONHSAT015489 | SAF, ENSG00000026103 | FAS antisense RNA 1 |
| FAS-AS1 | FAS-AS1 | SAF | FAS antisense RNA 1 |
| FENDRR | FENDRR | FOXF1 adjacent non-coding developmental regulatory RNA | lincFOXF1, onco-lncRNA-21 |
| FGF10-AS1 | FGF10-AS1 | RP11-473L15.2 | FGF10 antisense RNA 1 |
| FIRRE | ENST00000427391.1 | firre intergenic repeating RNA element | LINC01200 |
| FLG-AS1 | FLG-AS1 | N/A | FLG antisense RNA 1 |
| FLVCR1-AS1 | FLVCR1-AS1 | LQK1 | FLVCR1 antisense RNA 1 (head to head) |
| FMR1-AS1 | FMR1-AS1 | ASFMR1, FMR4 | FMR1 antisense RNA 1 |
| FOXC2-AS1 | FOXC2-AS1 | ODRUL | FOXC2 antisense RNA 1 |
| FOXCUT | Lnc-FOXC1-1:1,NONHSAT106529 | TCONS_00011636 | FOXC1 upstream transcript (non-protein coding) |
| FOXG1-AS1 | FOXG1-AS1 | FOXG1-AS | FOXG1 antisense RNA 1 (head to head) |
| FRGCA | FRGCA | LncRNA-AP001631.9 | FOXM1-regulated, gastric cancer associated |
| FTX | ENST00000602812.1 | LINC00182,FLJ33139 | FTX transcript, XIST regulator (non-protein coding) |
| GABPB1-AS1 | GABPB1-AS1 | N/A | GABPB1 antisense RNA 1 |
| GACAT1 | ENST00000441383.1 | LINC00876, AC096655.1-002 | gastric cancer associated transcript 1 (non-protein coding) |
| GACAT2 | ENST00000579368.1 | HMlincRNA717 | gastric cancer associated transcript 2 (non-protein coding) |
| GACAT3 | ENST00000426539.1 | lncRNA-AC130710 | gastric cancer associated transcript 3 (non-protein coding) |
| GAPLINC | GAPLINC | TCONSN/A00026238 | gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA |
| GAS1RR | GAS1RR | LncRNA-Hh | GAS1 adjacent regulatory RNA |
| GAS5 | NONHSAT007663 | SNHG2, ENSG00000234741 | N/A |
| GAS6-AS1 | GAS6-AS1 | N/A | GAS6 antisense RNA 1 |
| GAS8-AS1 | GAS8-AS1 | N/A | GAS8 antisense RNA 1 |
| GATA3-AS1 | GATA3-AS1 | N/A | GATA3 antisense RNA 1 |
| GATA6-AS1 | GATA6-AS1 | locus5689 | GATA6 antisense RNA 1 (head to head) |
| GDNF-AS1 | GDNF-AS1 | GDNFOS | GDNF antisense RNA 1 (head to head) |
| GHET1 | GHET1 | lncRNA-GHET1 | gastric carcinoma proliferation enhancing transcript 1 |
| GHRLOS | NONHSAT087920 | NCRNA00068,GHRL-AS1 | ghrelin opposite strand/antisense RNA |
| GLIDR | GLIDR | MGC21881, TCONSN/A00015562 | glioblastoma down-regulated RNA |
| GLIS3-AS1 | GLIS3-AS1 | MGC16153 | GLIS3 antisense RNA 1 |
| GNAS-AS1 | lnc-CTSZ-5:1 | GNAS antisense, GNAS1AS, NCRNA00075, NESP-AS, NESPAS, non-protein coding RNA 75, SANG, ENSG00000235590 | neuroendocrine secretory protein (Nesp) antisense. |
| GNG12-AS1 | GNG12-AS1 | N/A | GNG12 antisense RNA 1 |
| GPR1-AS | NONHSAT076558 | GPR1AS | GPR1 antisense RNA |
| GTSCR1 | GTSCR1 | N/A | Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding) |
| H19 | NONHSAT017465 | Q96MK8,ENSG00000130600 | H19, imprinted maternally expressed transcript (non-protein coding) |
| H1FX-AS1 | H1FX-AS1 | FLJ34151 | H1FX antisense RNA 1 |
| HAGLR | ENST00000416928.2,NONHSAT075638 | Mdgt | HOXD antisense growth-associated long non-coding RNA |
| HAND2-AS1 | HAND2-AS1 | DEIN, NBLA00301, FLJ11539 | HAND2 antisense RNA 1 (head to head) |
| HAR1A | lnc-BIRC7-2:1 | HAR1F, ENSG00000238820 | highly accelerated region 1A |
| HAR1B | ENST00000447910.2 | HAR1R, ENSG00000231133 | highly accelerated region 1B |
| HAS2-AS1 | HAS2-AS1 | HASNT, NCRNA00077 | HAS2 antisense RNA 1 |
| HCCAT5 | HCCAT5 | HTA, FJ222407 | hepatocellular carcinoma associated transcript 5 (non-protein coding) |
| HCG27 | HCG27 | bPG299F13.9, bCX101P6.9, bQB115I13.2, FLJ40123 | HLA complex group 27 (non-protein coding) |
| HCG4 | HCG4 | HCGIV-10, HCGIV.9 | HLA complex group 4 (non-protein coding) |
| HCG4B | HCG4B | HCGIV-6, HCGIV.5, HCGIV-06, bCX67J3.3, Em:AB023056.16, bPG309N1.1, bQB90C11.3 | HLA complex group 4B (non-protein coding) |
| HCG9 | HCG9 | PERB11, HCGIX, HCGIX4, HCGIX-4 | HLA complex group 9 (non-protein coding) |
| HCP5 | HCP5 | D6S2650E, P5-1 | HLA complex P5 (non-protein coding) |
| HEIH | HEIH | LINC-HEIH, lncRNA-HEIH, LINC00848, HCCAT2 | hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA |
| HELLPAR | HELLPAR | LINC-HELLP | HELLP associated long non-coding RNA |
| HEXA-AS1 | HEXA-AS1 | FLJ13315 | HEXA antisense RNA 1 |
| HIF1A-AS1 | HIF1A-AS1 | 5'aHIF-1A | HIF1A antisense RNA 1 |
| HIF1A-AS2 | HIF1A-AS2 | 3'aHIF-1A, aHIF | HIF1A antisense RNA 2 |
| HNF1A-AS1 | HNF1A-AS1 | FLJ38690 | HNF1A antisense RNA 1 |
| HNF4A-AS1 | HNF4A-AS1 | uc002xlx | HNF4A antisense RNA 1 |
| HORMAD2-AS1 | HORMAD2-AS1 | MTMR3-AS1, NONHSAG033653 | HORMAD2 antisense RNA 1 |
| HOTAIR | NONHSAT028508 | Gm16258, Hox antisense intergenic RNA, ENSG00000228630 | Hox antisense intergenic RNA |
| HOTAIRM1 | lnc-EVX1-12:1 | HIT06113, HIT92376, linc1548, ENSG00000233429 | HOXA transcript antisense RNA, myeloid-specific 1 |
| HOTTIP | NONHSAT119717 | HOXA13as, HIT18844, NCRNA00213, ENSG00000243766 | HOXA transcript at the distal tip |
| HOXA11-AS | NONHSAT119704 | HOXA cluster antisense RNA 5 (non-protein coding), HOXA-AS5, HOXA11 antisense RNA 1 (non-protein coding), HOXA11-AS1, HOXA11S, NCRNA00076, non-protein coding RNA 76, ENSG00000240990 | HOXA11 antisense RNA |
| HOXA-AS2 | NONHSAT119676 | HOXA3as, ENSG00000253552 | HOXA cluster antisense RNA 2 |
| HOXA-AS3 | lnc-EVX1-9:1 | HOXA6as | HOXA cluster antisense RNA 3 |
| HPVC1 | HPVC1 | PE5L, HPV18E5L | human papillomavirus (type 18) E5 central sequence-like 1 |
| HTT-AS | HTT-AS | HTTAS | HTT antisense RNA (head to head) |
| HULC | NONHSAT107640 | ENSG00000251164 | hepatocellular carcinoma up-regulated long non-coding RNA |
| HYMAI | HYMAI | NCRNA00020 | hydatidiform mole associated and imprinted (non-protein coding) |
| IDI2-AS1 | IDI2-AS1 | HT009, Em:AC022536.4 | IDI2 antisense RNA 1 |
| IFNG-AS1 | ENST00000538665.1 | LincR-Ifng-3'AS, NEST, Theiler's murine encephalomyelitis virus persistence candidate gene 1, Tmevpg1, ENSG00000255733 | IFNG antisense RNA 1 |
| IGF2-AS | IGF2-AS | PEG8, IGF2-AS1 | IGF2 antisense RNA |
| ILF3-AS1 | ILF3-AS1 | N/A | ILF3 antisense RNA 1 (head to head) |
| INE1 | INE1 | NCRNA00010 | inactivation escape 1 (non-protein coding) |
| INE2 | INE2 | NCRNA00011 | inactivation escape 2 (non-protein coding) |
| IPW | NONHSAT041063 | NCRNA00002 | imprinted in Prader-Willi syndrome |
| IRAIN | IRAIN | IGF1R-AS | IGF1R antisense imprinted non-protein coding RNA |
| JADRR | JADRR | lncRNA-JADE | JADE1 adjacent regulatory RNA |
| JMJD1C-AS1 | JMJD1C-AS1 | N/A | JMJD1C antisense RNA 1 |
| JPX | lnc-ZCCHC13-1:1 | DCBALD06, ENOX, expressed neighbor of XIST, just proximal to XIST, LINC00183 | JPX transcript, XIST activator (non-protein coding) |
| KANTR | ENST00000604849.1 | KDM5C adjacent non-coding transcript | Spasm |
| KCNIP4-IT1 | NONHSAT095745 | non coding transcript UM9(5), UM9-5 | KCNIP4 intronic transcript 1 (non-protein coding) |
| KCNK15-AS1 | KCNK15-AS1 | RP11-445H22.4 | KCNK15 antisense RNA 1 (head to head) |
| KCNMB2-AS1 | KCNMB2-AS1 | RP11-385J1.2 | KCNMB2 antisense RNA 1 |
| KCNQ1DN | KCNQ1DN | BWRT, HSA404617 | KCNQ1 downstream neighbor (non-protein coding) |
| KCNQ1OT1 | NONHSAT017524 | KCNQ1 antisense RNA 2 (non-protein coding), KCNQ1 overlapping transcript 1 (non-protein coding), KCNQ1-AS2, KvDMR1, KvLQT1-AS, LIT1, NCRNA00012, non-protein coding RNA 12 | KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) |
| KIAA1614-AS1 | KIAA1614-AS1 | RP11-46A10.4 | KIAA1614 antisense RNA 1 |
| KIF25-AS1 | KIF25-AS1 | HGC6.1.1 | KIF25 antisense RNA 1 |
| KRASP1 | NONHSAT113225 | ENSG00000220635 | KRAS Pseudogene 1 |
| LAMP5-AS1 | LAMP5-AS1 | N/A | LAMP5 antisense RNA 1 |
| LBX2-AS1 | LBX2-AS1 | N/A | LBX2 antisense RNA 1 |
| LCAL1 | LCAL1 | onco-lncRNA-27 | lung cancer associated lncRNA 1 |
| LHX5-AS1 | LHX5-AS1 | locus4010 | LHX5 antisense RNA 1 (head to head) |
| LIFR-AS1 | LIFR-AS1 | N/A | LIFR antisense RNA 1 |
| LINC00029 | LINC00029 | bA305P22.4 | long intergenic non-protein coding RNA 29 |
| LINC00052 | LINC00052 | FLJ31461 | long intergenic non-protein coding RNA 52 |
| LINC00094 | LINC00094 | FLJ35348, bA374P20.3 | long intergenic non-protein coding RNA 94 |
| LINC00114 | LINC00114 | N/A | long intergenic non-protein coding RNA 114 |
| LINC00115 | LINC00115 | FLJ22639 | long intergenic non-protein coding RNA 115 |
| LINC00152 | LINC00152 | MGC4677 | long intergenic non-protein coding RNA 152 |
| LINC00160 | LINC00160 | N/A | long intergenic non-protein coding RNA 160 |
| LINC00161 | LINC00161 | N/A | long intergenic non-protein coding RNA 161 |
| LINC00163 | LINC00163 | NLC1-A, NLC1A | long intergenic non-protein coding RNA 163 |
| LINC00165 | LINC00165 | NLC1-B | long intergenic non-protein coding RNA 165 |
| LINC00189 | LINC00189 | N/A | long intergenic non-protein coding RNA 189 |
| LINC00205 | LINC00205 | N/A | long intergenic non-protein coding RNA 205 |
| LINC00235 | LINC00235 | N/A | long intergenic non-protein coding RNA 235 |
| LINC00237 | LINC00237 | N/A | long intergenic non-protein coding RNA 237 |
| LINC00244 | LINC00244 | N/A | long intergenic non-protein coding RNA 244 |
| LINC00261 | LINC00261 | bA216C10.1, HCCDR1, TCONSN/A00027846, ALIEN, DEANR1, onco-lncRNA-17 | long intergenic non-protein coding RNA 261 |
| LINC00265 | LINC00265 | NCRNA00265-1 | long intergenic non-protein coding RNA 265 |
| LINC00272 | LINC00272 | RP1-223H12.3 | long intergenic non-protein coding RNA 272 |
| LINC00293 | LINC00293 | BEYLA | long intergenic non-protein coding RNA 293 |
| LINC00294 | LINC00294 | N/A | long intergenic non-protein coding RNA 294 |
| LINC00299 | LINC00299 | FLJ45673 | long intergenic non-protein coding RNA 299 |
| LINC00301 | LINC00301 | MGC39681 | long intergenic non-protein coding RNA 301 |
| LINC00302 | LINC00302 | XP33 | long intergenic non-protein coding RNA 302 |
| LINC00305 | LINC00305 | MGC39571, HsT1235 | long intergenic non-protein coding RNA 305 |
| LINC00307 | LINC00307 | D21S2091E | long intergenic non-protein coding RNA 307 |
| LINC00308 | LINC00308 | PRED16 | long intergenic non-protein coding RNA 308 |
| LINC00310 | LINC00310 | N/A | long intergenic non-protein coding RNA 310 |
| LINC00311 | LINC00311 | MGC22001 | long intergenic non-protein coding RNA 311 |
| LINC00312 | NONHSAT087716 | NAG7, NAG-7, ERR10, LMCD1DN, ERR-10 | long intergenic non-protein coding RNA 312 |
| LINC00313 | LINC00313 | N/A | long intergenic non-protein coding RNA 313 |
| LINC00314 | LINC00314 | N/A | long intergenic non-protein coding RNA 314 |
| LINC00315 | LINC00315 | N/A | long intergenic non-protein coding RNA 315 |
| LINC00320 | LINC00320 | PRED14, FLJ37539 | long intergenic non-protein coding RNA 320 |
| LINC00322 | LINC00322 | FLJ16545 | long intergenic non-protein coding RNA 322 |
| LINC00323 | LINC00323 | PRED42, FLJ37173 | long intergenic non-protein coding RNA 323 |
| LINC00324 | LINC00324 | FLJ34790, MGC104931 | long intergenic non-protein coding RNA 324 |
| LINC00334 | LINC00334 | N/A | long intergenic non-protein coding RNA 334 |
| LINC00337 | LINC00337 | MGC40168 | long intergenic non-protein coding RNA 337 |
| LINC00339 | LINC00339 | HSPC157 | long intergenic non-protein coding RNA 339 |
| LINC00342 | LINC00342 | N/A | long intergenic non-protein coding RNA 342 |
| LINC00346 | LINC00346 | N/A | long intergenic non-protein coding RNA 346 |
| LINC00347 | LINC00347 | N/A | long intergenic non-protein coding RNA 347 |
| LINC00426 | LINC00426 | N/A | long intergenic non-protein coding RNA 426 |
| LINC00441 | LINC00441 | ncRNA-RB1 | long intergenic non-protein coding RNA 441 |
| LINC00461 | LINC00461 | EyeLinc1, Visc-1a, Visc-1b, Visc-2, LOC645323 | long intergenic non-protein coding RNA 461 |
| LINC00466 | LINC00466 | N/A | long intergenic non-protein coding RNA 466 |
| LINC00467 | LINC00467 | MGC14801 | long intergenic non-protein coding RNA 467 |
| LINC00470 | LINC00470 | N/A | long intergenic non-protein coding RNA 470 |
| LINC00471 | LINC00471 | MGC43122 | long intergenic non-protein coding RNA 471 |
| LINC00472 | LINC00472 | dJ288M22.3, FLJ13189 | long intergenic non-protein coding RNA 472 |
| LINC00473 | LINC00473 | bA142J11.1 | long intergenic non-protein coding RNA 473 |
| LINC00477 | LINC00477 | FLJ32894, FAM191B | long intergenic non-protein coding RNA 477 |
| LINC00491 | LINC00491 | BC008363 | long intergenic non-protein coding RNA 491 |
| LINC00493 | LINC00493 | LOC388789 | long intergenic non-protein coding RNA 493 |
| LINC00494 | LINC00494 | N/A | long intergenic non-protein coding RNA 494 |
| LINC00507 | LINC00507 | N/A | long intergenic non-protein coding RNA 507 |
| LINC00511 | LINC00511 | onco-lncRNA-12 | long intergenic non-protein coding RNA 511 |
| LINC00518 | LINC00518 | MGC40222 | long intergenic non-protein coding RNA 518 |
| LINC00526 | LINC00526 | MGC17515, HsT959 | long intergenic non-protein coding RNA 526 |
| LINC00528 | LINC00528 | FLJ40542 | long intergenic non-protein coding RNA 528 |
| LINC00529 | LINC00529 | N/A | long intergenic non-protein coding RNA 529 |
| LINC00536 | LINC00536 | N/A | long intergenic non-protein coding RNA 536 |
| LINC00538 | LINC00538 | Yiya, PROX1UT | long intergenic non-protein coding RNA 538 |
| LINC00570 | ENST00000437795.1,ENST00000432665.1,ENST00000453100.1,ENST00000417473.2 | KDM5BAS1, ncRNA-a2, onco-lncRNA-96, PCAN-R1, prostate cancer-associated noncoding RNA 1,ENSG00000224177, | prostate cancer associated transcript 6 (non-protein coding) |
| LINC00575 | LINC00575 | N/A | long intergenic non-protein coding RNA 575 |
| LINC00581 | lnc-PRL-6:2,lnc-PRL-6:1 | BX118339,Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678 | long intergenic non-protein coding RNA 581 |
| LINC00588 | LINC00588 | DKFZP434F122 | long intergenic non-protein coding RNA 588 |
| LINC00593 | LINC00593 | MGC42951 | long intergenic non-protein coding RNA 593 |
| LINC00598 | LINC00598 | TTL | long intergenic non-protein coding RNA 598 |
| LINC00599 | lnc-TNKS-1:1 | retinal non-coding RNA 3, Rncr3, ENSG00000253230 | Retinal noncoding RNA 3, long intergenic non-protein coding RNA 599 |
| LINC00608 | LINC00608 | N/A | long intergenic non-protein coding RNA 608 |
| LINC00612 | LINC00612 | MGC40170, FLJ41814 | long intergenic non-protein coding RNA 612 |
| LINC00620 | LINC00620 | N/A | long intergenic non-protein coding RNA 620 |
| LINC00623 | LINC00623 | N/A | long intergenic non-protein coding RNA 623 |
| LINC00628 | LINC00628 | N/A | long intergenic non-protein coding RNA 628 |
| LINC00632 | LINC00632 | N/A | long intergenic non-protein coding RNA 632 |
| LINC00634 | LINC00634 | N/A | long intergenic non-protein coding RNA 634 |
| LINC00635 | LINC00635 | N/A | long intergenic non-protein coding RNA 635 |
| LINC00636 | LINC00636 | N/A | long intergenic non-protein coding RNA 636 |
| LINC00638 | LINC00638 | MGC23270 | long intergenic non-protein coding RNA 638 |
| LINC00649 | LINC00649 | TCONSN/A00028768 | long intergenic non-protein coding RNA 649 |
| LINC00652 | LINC00652 | HSPC072 | long intergenic non-protein coding RNA 652 |
| LINC00661 | LINC00661 | N/A | long intergenic non-protein coding RNA 661 |
| LINC00662 | LINC00662 | N/A | long intergenic non-protein coding RNA 662 |
| LINC00663 | LINC00663 | MGC39821 | long intergenic non-protein coding RNA 663 |
| LINC00667 | LINC00667 | N/A | long intergenic non-protein coding RNA 667 |
| LINC00668 | LINC00668 | N/A | long intergenic non-protein coding RNA 668 |
| LINC00673 | LINC00673 | HI-LNC75 | long intergenic non-protein coding RNA 673 |
| LINC00675 | LINC00675 | N/A | long intergenic non-protein coding RNA 675 |
| LINC00682 | LINC00682 | N/A | long intergenic non-protein coding RNA 682 |
| LINC00685 | LINC00685 | OTTHUMT00000055574 | long intergenic non-protein coding RNA 685 |
| LINC00689 | LINC00689 | N/A | long intergenic non-protein coding RNA 689 |
| LINC00692 | LINC00692 | N/A | long intergenic non-protein coding RNA 692 |
| LINC00704 | LINC00704 | N/A | long intergenic non-protein coding RNA 704 |
| LINC00705 | LINC00705 | N/A | long intergenic non-protein coding RNA 705 |
| LINC00839 | LINC00839 | N/A | long intergenic non-protein coding RNA 839 |
| LINC00850 | LINC00850 | KUCG1 | long intergenic non-protein coding RNA 850 |
| LINC00852 | LINC00852 | NAG73, GHRL-AS2 | long intergenic non-protein coding RNA 852 |
| LINC00853 | ENST00000429328.2 | PDZK1IP1 antisense RNA 1 (non-protein coding), PDZK1IP1 antisense RNA 1 (tail to tail), PDZK1IP1-AS1 ,ENSG00000224805 | long intergenic non-protein coding RNA 853 |
| LINC00854 | LINC00854 | N/A | long intergenic non-protein coding RNA 854 |
| LINC00857 | LINC00857 | N/A | long intergenic non-protein coding RNA 857 |
| LINC00868 | LINC00868 | N/A | long intergenic non-protein coding RNA 868 |
| LINC00869 | LINC00869 | KIAA0493 | long intergenic non-protein coding RNA 869 |
| LINC00880 | LINC00880 | N/A | long intergenic non-protein coding RNA 880 |
| LINC00882 | LINC00882 | N/A | long intergenic non-protein coding RNA 882 |
| LINC00887 | LINC00887 | linc-ATP13A4-8 | long intergenic non-protein coding RNA 887 |
| LINC00893 | LINC00893 | N/A | long intergenic non-protein coding RNA 893 |
| LINC00901 | LINC00901 | TCONSN/A00005428, BC040587 | long intergenic non-protein coding RNA 901 |
| LINC00917 | LINC00917 | N/A | long intergenic non-protein coding RNA 917 |
| LINC00936 | LINC00936 | N/A | long intergenic non-protein coding RNA 936 |
| LINC00942 | LINC00942 | N/A | long intergenic non-protein coding RNA 942 |
| LINC00950 | LINC00950 | FP588 | long intergenic non-protein coding RNA 950 |
| LINC00951 | LINC00951 | lincRNA-uc003opf.1, FLJ41649 | long intergenic non-protein coding RNA 951 |
| LINC00961 | LINC00961 | N/A | long intergenic non-protein coding RNA 961 |
| LINC00963 | LINC00963 | N/A | long intergenic non-protein coding RNA 963 |
| LINC00964 | LINC00964 | N/A | long intergenic non-protein coding RNA 964 |
| LINC00970 | LINC00970 | N/A | long intergenic non-protein coding RNA 970 |
| LINC00974 | LINC00974 | N/A | long intergenic non-protein coding RNA 974 |
| LINC00977 | LINC00977 | N/A | long intergenic non-protein coding RNA 977 |
| LINC00982 | LINC00982 | FLJ42875 | long intergenic non-protein coding RNA 982 |
| LINC00993 | LINC00993 | N/A | long intergenic non-protein coding RNA 993 |
| LINC00994 | LINC00994 | N/A | long intergenic non-protein coding RNA 994 |
| LINC00996 | LINC00996 | N/A | long intergenic non-protein coding RNA 996 |
| LINC01016 | LINC01016 | N/A | long intergenic non-protein coding RNA 1016 |
| LINC01018 | LINC01018 | N/A | long intergenic non-protein coding RNA 1018 |
| LINC01019 | LINC01019 | N/A | long intergenic non-protein coding RNA 1019 |
| LINC01020 | LINC01020 | N/A | long intergenic non-protein coding RNA 1020 |
| LINC01021 | LINC01021 | N/A | long intergenic non-protein coding RNA 1021 |
| LINC01024 | LINC01024 | MA-linc1 | long intergenic non-protein coding RNA 1024 |
| LINC01029 | LINC01029 | N/A | long intergenic non-protein coding RNA 1029 |
| LINC01080 | LINC01080 | TCONSN/A00021856 | long intergenic non-protein coding RNA 1080 |
| LINC01081 | LINC01081 | TCONSN/A00024764 | long intergenic non-protein coding RNA 1081 |
| LINC01082 | LINC01082 | TCONSN/A00024492 | long intergenic non-protein coding RNA 1082 |
| LINC01089 | LINC01089 | N/A | long intergenic non-protein coding RNA 1089 |
| LINC01090 | LINC01090 | N/A | long intergenic non-protein coding RNA 1090 |
| LINC01091 | LINC01091 | N/A | long intergenic non-protein coding RNA 1091 |
| LINC01096 | LINC01096 | N/A | long intergenic non-protein coding RNA 1096 |
| LINC01105 | LINC01105 | FLJ30594, LOC150622 | long intergenic non-protein coding RNA 1105 |
| LINC01108 | LINC01108 | LncRNA-ES1 | long intergenic non-protein coding RNA 1108 |
| LINC01122 | LINC01122 | FLJ30838 | long intergenic non-protein coding RNA 1122 |
| LINC01133 | LINC01133 | N/A | long intergenic non-protein coding RNA 1133 |
| LINC01139 | LINC01139 | N/A | long intergenic non-protein coding RNA 1139 |
| LINC01140 | LINC01140 | FLJ41676 | long intergenic non-protein coding RNA 1140 |
| LINC01150 | LINC01150 | 2G7, TCONSN/A00019134 | long intergenic non-protein coding RNA 1150 |
| LINC01152 | LINC01152 | TCONSN/A00025128, CMPD | long intergenic non-protein coding RNA 1152 |
| LINC01154 | LINC01154 | N/A | long intergenic non-protein coding RNA 1154 |
| LINC01157 | LINC01157 | TCONSN/A00010378, linc-Enc1 | long intergenic non-protein coding RNA 1157 |
| LINC01158 | LINC01158 | linc-Brn1a | long intergenic non-protein coding RNA 1158 |
| LINC01159 | LINC01159 | linc-Brn1b | long intergenic non-protein coding RNA 1159 |
| LINC01184 | LINC01184 | FLJ33630 | long intergenic non-protein coding RNA 1184 |
| LINC01185 | LINC01185 | FLJ16341 | long intergenic non-protein coding RNA 1185 |
| LINC01191 | ENST00000412690.1 | VIN, lnc-ACTR3 | long intergenic non-protein coding RNA 1191 |
| LINC01192 | LINC01192 | N/A | long intergenic non-protein coding RNA 1192 |
| LINC01193 | LINC01193 | LOC348120 | long intergenic non-protein coding RNA 1193 |
| LINC01194 | LINC01194 | TAG | long intergenic non-protein coding RNA 1194 |
| LINC01202 | LINC01202 | N/A | long intergenic non-protein coding RNA 1202 |
| LINC01207 | LINC01207 | N/A | long intergenic non-protein coding RNA 1207 |
| LINC01225 | LINC01225 | N/A | long intergenic non-protein coding RNA 1225 |
| LINC01228 | LINC01228 | lincRNA-DYNLRB2-2 | long intergenic non-protein coding RNA 1228 |
| LINC01230 | LINC01230 | linc-DMRT2, lnc-DRMT2, TCONSN/A00015639 | long intergenic non-protein coding RNA 1230 |
| LINC01232 | LINC01232 | FLJ41590, TCONSN/A00021520 | long intergenic non-protein coding RNA 1232 |
| LINC01233 | LINC01233 | XLOCN/A013014 | long intergenic non-protein coding RNA 1233 |
| LINC01234 | LINC01234 | onco-lncRNA-32 | long intergenic non-protein coding RNA 1234 |
| LINC01252 | LINC01252 | N/A | long intergenic non-protein coding RNA 1252 |
| LINC01262 | LINC01262 | TCONSN/Al2N/A00021807, RP11-462G22.1 | long intergenic non-protein coding RNA 1262 |
| LINC01264 | LINC01264 | RP11-124O11.2 | long intergenic non-protein coding RNA 1264 |
| LINC01268 | LINC01268 | LOC285758 | long intergenic non-protein coding RNA 1268 |
| LINC01296 | LINC01296 | FLJ39632 | long intergenic non-protein coding RNA 1296 |
| LINC01312 | LINC01312 | MGC34034 | long intergenic non-protein coding RNA 1312 |
| LINC01317 | LINC01317 | N/A | long intergenic non-protein coding RNA 1317 |
| LINC01370 | LINC01370 | HI-LNC25 | long intergenic non-protein coding RNA 1370 |
| LINC01374 | LINC01374 | TCONSN/A00018278 | long intergenic non-protein coding RNA 1374 |
| LINC01405 | LINC01405 | N/A | long intergenic non-protein coding RNA 1405 |
| LINC01411 | LINC01411 | RP11-267A15.1 | long intergenic non-protein coding RNA 1411 |
| LINC01420 | LINC01420 | N/A | long intergenic non-protein coding RNA 1420 |
| LINC01433 | LINC01433 | LOC728228 | long intergenic non-protein coding RNA 1433 |
| LINC01435 | LINC01435 | RP11-215N21.1, TCONSN/A00018040 | long intergenic non-protein coding RNA 1435 |
| LINC01436 | LINC01436 | AP000688.8 | long intergenic non-protein coding RNA 1436 |
| LINC01468 | LINC01468 | lnc-MBL2-4 | long intergenic non-protein coding RNA 1468 |
| LINC01478 | LINC01478 | N/A | long intergenic non-protein coding RNA 1478 |
| LINC01501 | LINC01501 | N/A | long intergenic non-protein coding RNA 1501 |
| LINC01503 | LINC01503 | lnc-PPP2R4-5 | long intergenic non-protein coding RNA 1503 |
| LINC01507 | LINC01507 | XLOCN/A000303 | long intergenic non-protein coding RNA 1507 |
| LINC01511 | LINC01511 | RP11-325I22.2 | long intergenic non-protein coding RNA 1511 |
| LINC01512 | LINC01512 | LOC100132354, TCONSN/A00011120, HI-LNC77 | long intergenic non-protein coding RNA 1512 |
| LINC01513 | LINC01513 | RP11-1C1.7, TCONSN/A00009352 | long intergenic non-protein coding RNA 1513 |
| LINC01525 | LINC01525 | lnc-MAN1A2-1 | long intergenic non-protein coding RNA 1525 |
| LINC01526 | LINC01526 | Lnc-FAM46A-1 | long intergenic non-protein coding RNA 1526 |
| LINC01527 | LINC01527 | lnc-SPRR2D-1 | long intergenic non-protein coding RNA 1527 |
| LINC01537 | LINC01537 | RP11-169D4.1-001 | long intergenic non-protein coding RNA 1537 |
| LINC01547 | LINC01547 | N/A | long intergenic non-protein coding RNA 1547 |
| LINC01553 | LINC01553 | AC023904.2 | long intergenic non-protein coding RNA 1553 |
| LINC01558 | LINC01558 | HGC6.2, dJ431P23.4 | long intergenic non-protein coding RNA 1558 |
| LINC01559 | LINC01559 | FLJ33810 | long intergenic non-protein coding RNA 1559 |
| LINC01560 | LINC01560 | N/A | long intergenic non-protein coding RNA 1560 |
| LINC01562 | LINC01562 | RP11-296A18.3 | long intergenic non-protein coding RNA 1562 |
| LINC01564 | LINC01564 | TCONSN/A00011314 | long intergenic non-protein coding RNA 1564 |
| LINC01565 | LINC01565 | GR6 | long intergenic non-protein coding RNA 1565 |
| LINC01574 | LINC01574 | HI-LNC12, TCONSN/A00009551 | long intergenic non-protein coding RNA 1574 |
| LINC01587 | LINC01587 | aC1 | long intergenic non-protein coding RNA 1587 |
| LINC01589 | LINC01589 | CTA-941F9.9, TCONSN/A00029353 | long intergenic non-protein coding RNA 1589 |
| LINC01591 | LINC01591 | N/A | long intergenic non-protein coding RNA 1591 |
| LINC01602 | LINC01602 | T1560 | long intergenic non-protein coding RNA 1602 |
| LINC01611 | LINC01611 | RP1-90L14.1, TCONSN/Al2N/A00025430 | long intergenic non-protein coding RNA 1611 |
| LINC01612 | LINC01612 | RP11-789C1.1, TCONSN/A00008319 | long intergenic non-protein coding RNA 1612 |
| LINC01613 | LINC01613 | n341773 | long intergenic non-protein coding RNA 1613 |
| LINC01614 | LINC01614 | LCAL4, TCONSN/A00003105 | long intergenic non-protein coding RNA 1614 |
| LINC01616 | LINC01616 | n341006 | long intergenic non-protein coding RNA 1616 |
| LINC01617 | LINC01617 | XLOCN/A006844 | long intergenic non-protein coding RNA 1617 |
| LINC01618 | LINC01618 | LOC152578 | long intergenic non-protein coding RNA 1618 |
| LINC01622 | LINC01622 | TCONSN/A00011202 | long intergenic non-protein coding RNA 1622 |
| LINC01627 | LINC01627 | RP11-397D12.4 | long intergenic non-protein coding RNA 1627 |
| LINC01628 | LINC01628 | AC007403.1 | long intergenic non-protein coding RNA 1628 |
| LINC01629 | LINC01629 | linc-KIAA1737-2 | long intergenic non-protein coding RNA 1629 |
| LINCMD1 | LINCMD1 | N/A | long intergenic non-protein coding RNA, muscle differentiation 1 |
| LINC-PINT | NONHSAT123382 | FLJ43663, PINT, LincRNA-Pint | long intergenic non-protein coding RNA, p53 induced transcript |
| lincRNA-ROR | NONHSAT059436 | ROR, lincRNA-ST8SIA3, ENSG00000258609 | long intergenic non-protein coding RNA, regulator of reprogramming |
| LINGO1-AS1 | LINGO1-AS1 | N/A | LINGO1 antisense RNA 1 |
| LMCD1-AS1 | LMCD1-AS1 | N/A | LMCD1 antisense RNA 1 (head to head) |
| LOC100887755 | lnc-SNAI1-1:1 | Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1 | translation regulatory long non-coding RNA 1 |
| LOH12CR2 | LOH12CR2 | LOH2CR12 | loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) |
| LOXL1-AS1 | LOXL1-AS1 | N/A | LOXL1 antisense RNA 1 |
| LPP-AS2 | LPP-AS2 | N/A | LPP antisense RNA 2 |
| LRP1-AS | LRP1-AS | N/A | LRP1 antisense RNA |
| LRRC75A-AS1 | LRRC75A-AS1 | MGC40157 | LRRC75A antisense RNA 1 |
| LSINCT5 | LSINCT5 | N/A | long stress-induced non-coding transcript 5 |
| LUADT1 | LUADT1 | N/A | lung adenocarcinoma associated transcript 1 |
| LUCAT1 | ENST00000511918.1 | SCAL1 | lung cancer associated transcript 1 (non-protein coding) |
| LUNAR1 | LUNAR1 | N/A | leukemia-associated non-coding IGF1R activator RNA 1 |
| MAFA-AS1 | MAFA-AS1 | RP11-909N17.3, TCONSN/A00014882 | MAFA antisense RNA 1 |
| MAFG-AS1 | MAFG-AS1 | N/A | MAFG antisense RNA 1 (head to head) |
| MAFTRR | MAFTRR | linc-MAF-4 | MAF transcriptional regulator RNA |
| MAGEA8-AS1 | MAGEA8-AS1 | RP5-869M20.2 | MAGEA8 antisense RNA 1 (head to head) |
| MALAT1 | ENST00000534336.1 | HCN, hepcarcin, LINC00047, long intergenic non-protein coding RNA 47, MALAT-1, mascRNA, metastasis associated in lung adenocarcinoma transcript 1, NCRNA00047, NEAT2, non-protein coding RNA 47, nuclear enriched abundant transcript 2, nuclear paraspeckle assembly transcript 2 (non-protein coding), PRO1073, ENSG00000251562 | metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) |
| MAPKAPK5-AS1 | MAPKAPK5-AS1 | FLJ39616 | MAPKAPK5 antisense RNA 1 |
| mascRNA | lnc-SCYL1-1:5 | Malat1 | mascRNA (MALAT1-associated small cytoplasmic RNA) |
| MCM3AP-AS1 | MCM3AP-AS1 | FLJ10508, NCRNA00031 | MCM3AP antisense RNA 1 |
| MDC1-AS1 | MDC1-AS1 | MDC1-AS | MDC1 antisense RNA 1 |
| MEF2C-AS1 | MEF2C-AS1 | N/A | MEF2C antisense RNA 1 |
| MEG3 | NONHSAT039745 | Gtl2, ENSG00000214548 | maternally expressed 3 (non-protein coding) |
| MEG8 | ENST00000553584.1 | Bsr, Imprinted RNA near Meg3/Gtl2, Irm, LINC00024, long intergenic non-protein coding RNA 24, NCRNA00024, non-protein coding RNA 24, Rian, RNA Imprinted and Accumulated in Nucleus, ENSG00000258399 | Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8 |
| MEG9 | ENST00000553584.1,[[ | LINC00584 | maternally expressed 9 (non-protein coding) |
| MESTIT1 | MESTIT1 | NCRNA00040, MEST-AS1 | MEST intronic transcript 1, antisense RNA |
| MGAT3-AS1 | MGAT3-AS1 | TapSAKI | MGAT3 antisense RNA 1 |
| MHRT | MHRT | Myheart | myosin heavy chain-associated RNA transcript |
| MIAT | lnc-CRYBA4-2:1 | FLJ25967, gomafu, LINC00066, lncRNA-MIAT, long intergenic non-protein coding RNA 66, NCRNA00066, non-protein coding RNA 66, Rncr2 | myocardial infarction associated transcript (non-protein coding) |
| MIF-AS1 | MIF-AS1 | LOC284889 | MIF antisense RNA 1 |
| MIMT1 | MIMT1 | MIM1, NCRNA00067, LINC00067 | MER1 repeat containing imprinted transcript 1 (non-protein coding) |
| MINCR | ENST00000517411.1 | TCONSN/A00015189 | MYC-induced long noncoding RNA |
| MIR100HG | ENST00000531381.1 | AGD1, lncRNA-N2 | mir-100-let-7a-2 cluster host gene |
| MIR137HG | MIR137HG | N/A | MIR137 host gene |
| MIR155HG | NONHSAT081499 | BIC, NCRNA00172 | MIR155 host gene |
| MIR17HG | MIR17HG | FLJ14178, MIRH1, MIHG1, NCRNA00048, miR-17-92, LINC00048 | miR-17-92a-1 cluster host gene |
| MIR181A2HG | MIR181A2HG | N/A | MIR181A2 host gene |
| MIR210HG | MIR210HG | N/A | MIR210 host gene |
| MIR222HG | ENST00000602507.1 | Lnc-Ang362 | MIR222 host gene |
| MIR22HG | ENST00000574306.1 | MGC14376, DKFZp686O06159, LOC554202 | MIR22 host gene |
| MIR34AHG | MIR34AHG | N/A | MIR34A host gene |
| MIR4435-2HG | MIR4435-2HG | LINC00978, AGD2, AK001796 | MIR4435-2 host gene |
| MIR503HG | ENST00000414769.1 | MGC16121, H19X | MIR503 host gene |
| MIR600HG | MIR600HG | GL012, FLJ22161 | MIR600 host gene |
| MIR663AHG | MIR663AHG | RP3-410C9.1 | MIR663A host gene |
| MIR7-3HG | MIR7-3HG | PGSF1, PGSF1a, PGSF1b, Huh7, uc002mbe.2 | MIR7-3 host gene |
| MIR99AHG | ENST00000602580.1 | MONC | mir-99a-let-7c cluster host gene |
| MIRLET7BHG | MIRLET7BHG | linc-Ppara | MIRLET7B host gene |
| MIRLET7DHG | MIRLET7DHG | N/A | MIRLET7D host gene |
| MKRN3-AS1 | MKRN3-AS1 | FNZ127, NCRNA00009, ZNF127-AS | MKRN3 antisense RNA 1 |
| MLK7-AS1 | MLK7-AS1 | N/A | MLK7 antisense RNA 1 |
| MLLT4-AS1 | MLLT4-AS1 | HGC6.4, dJ431P23.3 | MLLT4 antisense RNA 1 (head to head) |
| MORF4L2-AS1 | MORF4L2-AS1 | N/A | MORF4L2 antisense RNA 1 |
| MT-LIPCAR | MT-LIPCAR | uc022bqs.1, LIPCAR | mitochondrially encoded long non-coding cardiac associated RNA |
| MYCNOS | MYCNOS | NCYM, N-CYM, MYCN-AS1 | MYCN opposite strand |
| MYCNUT | ENST00000433810.1 | lncUSMycN | MYCN upstream transcript (non-protein coding) |
| N4BP2L2-IT2 | N4BP2L2-IT2 | CG030 | N4BPL2 intronic transcript 2 |
| NALT1 | NALT1 | TCONSN/Al2N/A00029132 | NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1 |
| NAMA | ENST00000604258.1 | N/A | non-protein coding RNA, associated with MAP kinase pathway and growth arrest |
| NBAT1 | NBAT1 | NBAT-1 | neuroblastoma associated transcript 1 |
| NBR2 | NBR2 | NCRNA00192 | neighbor of BRCA1 gene 2 (non-protein coding) |
| NCBP2-AS2 | NCBP2-AS2 | N/A | NCBP2 antisense RNA 2 (head to head) |
| NCOA7-AS1 | NCOA7-AS1 | N/A | NCOA7 antisense RNA 1 |
| ncR-PAR | NONHSAT102247 | NCRUPAR, ENSG00000225407 | non-protein coding RNA, upstream of F2R/PAR1 |
| NCRUPAR | NCRUPAR | ncR-uPAR, ncRuPAR, NCRNA00193 | non-protein coding RNA, upstream of F2R/PAR1 |
| NDM29 | lnc-C11orf16-1:1 | 29A | neuroblastoma differentiation marker 29 (Castelnuovo (2010),?Pagano (2007)). |
| NEAT1 | ENST00000501122.2,NONHSAT022111 | MEN epsilon/beta, VINC, TncRNA, linc1317, ENSG00000245532 | Nuclear enriched abundant transcript 1. |
| NFIA-AS1 | NFIA-AS1 | RP5-833A20.1 | NFIA antisense RNA 1 |
| NIPBL-AS1 | NIPBL-AS1 | NIPBL-AS | NIPBL antisense RNA 1 (head to head) |
| NKILA | NKILA | N/A | NF-kappaB interacting long non-coding RNA |
| NKX2-2-AS1 | NKX2-2-AS1 | NKX2-2AS | NKX2-2 antisense RNA 1 |
| NOP14-AS1 | NOP14-AS1 | RES4-24 | NOP14 antisense RNA 1 |
| NORAD | NORAD | N/A | non-coding RNA activated by DNA damage |
| NPHP3-AS1 | NPHP3-AS1 | N/A | NPHP3 antisense RNA 1 |
| NPPA-AS1 | NPPA-AS1 | N/A | NPPA antisense RNA 1 |
| NPSR1-AS1 | NPSR1-AS1 | AAA1, IMAGE:4827585 | NPSR1 antisense RNA 1 |
| NPTN-IT1 | NPTN-IT1 | lncRNA-LET | NPTN intronic transcript 1 |
| NR2F1-AS1 | NR2F1-AS1 | FLJ42709 | NR2F1 antisense RNA 1 |
| NRAV | NRAV | N/A | negative regulator of antiviral response (non-protein coding) |
| NRIR | ENST00000414795.1 | lncRNA-CMPK2 | negative regulator of interferon response (non-protein coding) |
| NRON | NONHSAT134764 | ENSG00000253079 | non-protein coding RNA, repressor of NFAT |
| NTT | NONHSAT115106 | N/A | noncoding transcript in T cells. |
| OIP5-AS1 | ENST00000500949.2 | cyrano,LOC729082, linc-NUSAP1-1, OIP5-AS1 | OIP5 antisense RNA 1 |
| OLMALINC | OLMALINC | bA34D15.5, FLJ12974, HI-LNC80 | oligodendrocyte maturation-associated long intergenic non-coding RNA |
| OTX2-AS1 | lnc-C14orf101-5:1 | OTX2OS1, ENSG00000248550 | OTX2 antisense RNA 1 (head to head) |
| OVAAL | ENST00000442621.1 | LINC01131,OVAL | ovarian adenocarcinoma amplified long non-coding RNA |
| PACERR | ENST00000608917.1 | PACER, PTGS2-AS1 | PTGS2 antisense NFKB1 complex-mediated expression regulator RNA |
| PANCR | PANCR | N/A | PITX2 adjacent non-coding RNA |
| PANDAR | lnc-CDKN1A-1:1 | P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR | promoter of CDKN1A antisense DNA damage activated RNA |
| PAPPA-AS1 | PAPPA-AS1 | PAPPA-AS, DIPAS, TAF4B, TAF2C2, TAFII105, NCRNA00156 | PAPPA antisense RNA 1 |
| PAPPA-AS2 | PAPPA-AS2 | AGU1 | PAPPA antisense RNA 2 |
| PART1 | ENST00000506884.1 | DKFZP586D0823, NCRNA00206 | prostate androgen-regulated transcript 1 (non-protein coding) |
| PARTICL | PARTICL | PARTICLE | promoter of MAT2A antisense radiation-induced circulating long non-coding RNA |
| PAUPAR | NONHSAT018635 | N/A | PAX6 upstream antisense RNA |
| PAXIP1-AS1 | PAXIP1-AS1 | N/A | PAXIP1 antisense RNA 1 (head to head) |
| PCA3 | ENST00000412654.1 | DD3, NCRNA00019, PCAT3 | prostate cancer associated 3 (non-protein coding) |
| PCAT1 | ENST00000561978.1 | PCAT-1, PCA1 | prostate cancer associated transcript 1 (non-protein coding) |
| PCAT14 | PCAT14 | N/A | prostate cancer associated transcript 14 (non-protein coding) |
| PCAT18 | PCAT18 | LINC01092 | prostate cancer associated transcript 18 (non-protein coding) |
| PCAT19 | PCAT19 | LINC01190 | prostate cancer associated transcript 19 (non-protein coding) |
| PCAT29 | PCAT29 | N/A | prostate cancer associated transcript 29 (non-protein coding) |
| PCAT4 | ENST00000504263.1 | GDEP, PCAN1, PCA4 | prostate cancer associated transcript 4 (non-protein coding) |
| PCAT5 | PCAT5 | TPCAT-10-36067 | prostate cancer associated transcript 5 (non-protein coding) |
| PCAT6 | ENST00000425295.1,ENST00000553157.1,ENST00000417262.1 | N/A | Noncoding RNA activating2: ncRNA-a2, KDM5B antisense RNA 1 (KDM5B-AS1),, ENSG00000228288 |
| PCAT7 | PCAT7 | PCAN-R2 | prostate cancer associated transcript 7 (non-protein coding) |
| PCBP2-OT1 | PCBP2-OT1 | TUC338 | PCBP2 overlapping transcript 1 |
| PCBP3-OT1 | PCBP3-OT1 | FLJ44028 | PCBP3 overlapping transcript 1 |
| PCF11-AS1 | PCF11-AS1 | ENST00000602322.1 | PCF11 anstisense RNA 1 |
| PCGEM1 | NONHSAT076153 | ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA | Prostate-specific transcript 1 |
| PCNA-AS1 | PCNA-AS1 | N/A | PCNA antisense RNA 1 |
| PEG13 | PEG13 | N/A | paternally expressed 13 |
| PEG3-AS1 | PEG3-AS1 | APEG3, NCRNA00155 | PEG3 antisense RNA 1 |
| PICSAR | PICSAR | PRED74, NLC1-C | P38 inhibited cutaneous squamous cell carcinoma associated lincRNA |
| PINK1-AS | PINK1-AS | FLJ00387, PINK1AS, naPINK1 | PINK1 antisense RNA |
| PISRT1 | PISRT1 | NCRNA00195 | polled intersex syndrome regulated transcript 1 (non-protein coding RNA) |
| PR antisense transcripts | NONHSAT023851 | N/A | N/A |
| PRINS | NONHSAT011777 | ENSG00000238115 | Psoriasis susceptibility-related RNA Gene Induced by Stress |
| PRKCQ-AS1 | PRKCQ-AS1 | ENST00000414894.1 | PRKCQ antisense RNA 1 |
| PRNCR1 | NONHSAT129019 | N/A | prostate cancer associated non-coding RNA 1 |
| PRR7-AS1 | PRR7-AS1 | N/A | PRR7 antisense RNA 1 |
| PSMA3-AS1 | PSMA3-AS1 | FLJ31306 | PSMA3 antisense RNA 1 |
| PSMD5-AS1 | PSMD5-AS1 | N/A | PSMD5 antisense RNA 1 (head to head) |
| PTCSC1 | NONHSAT129210 | AK023948, NCRNA00197 | papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding) |
| PTCSC2 | ENST00000430058.1 | N/A | papillary thyroid carcinoma susceptibility candidate 2 (non-protein coding) |
| PTCSC3 | ENST00000556013.2 | N/A | papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) |
| PTENP1 | NONHSAT130775 | PTENpg1, PTEN2, ENSG00000237984 | PTEN Pseudogene 1 |
| PTENP1-AS | PTENP1-AS | PTENpg1-asRNA | PTENP1 antisense RNA |
| PTPRJ-AS1 | PTPRJ-AS1 | N/A | PTPRJ antisense RNA 1 |
| PVT1 | ENST00000513868.2 | NCRNA00079, LINC00079, onco-lncRNA-100 | Pvt1 oncogene (non-protein coding) |
| PWAR1 | PWAR1 | PAR1, PAR-1 | Prader Willi/Angelman region RNA 1 |
| PWAR4 | PWAR4 | PAR4, PAR-4 | Prader Willi/Angelman region RNA 4 |
| PWAR5 | PWAR5 | PAR5, PAR-5 | Prader Willi/Angelman region RNA 5 |
| PWARSN | PWARSN | PAR-SN, PARSN | Prader Willi/Angelman region RNA, SNRPN neighbor |
| PWRN1 | NONHSAT040920 | NCRNA00198 | Prader-Willi region non-protein coding RNA 1 |
| PWRN2 | NONHSAT040875 | NCRNA00199 | Prader-Willi region non-protein coding RNA 2 |
| RAD51-AS1 | RAD51-AS1 | TODRA | RAD51 antisense RNA 1 (head to head) |
| RASSF1-AS1 | RASSF1-AS1 | RASSF1 antisense RNA 1 | ANRASSF1 |
| RBM5-AS1 | NONHSAT089783 | LUCA-15-specific transcript, LUST, ENSG00000003756 | RBM5 antisense RNA 1 |
| RFPL1S | RFPL1S | RFPL1-AS, NCRNA00006 | RFPL1 antisense RNA 1 |
| RGMB-AS1 | RGMB-AS1 | N/A | RGMB antisense RNA 1 |
| RHPN1-AS1 | RHPN1-AS1 | MGC3113 | RHPN1 antisense RNA 1 (head to head) |
| RMST | RMST | NCRMS, NCRNA00054, LINC00054 | rhabdomyosarcoma 2 associated transcript (non-protein coding) |
| RNF217-AS1 | RNF217-AS1 | STL | RNF217 antisense RNA 1 (head to head) |
| RNF219-AS1 | RNF219-AS1 | N/A | RNF219 antisense RNA 1 |
| RPL34-AS1 | RPL34-AS1 | FLJ37673, RP11-462C24.1 | RPL34 antisense RNA 1 (head to head) |
| RPS6KA2-AS1 | RPS6KA2-AS1 | N/A | RPS6KA2 antisense RNA 1 |
| RUSC1-AS1 | RUSC1-AS1 | FLJ35976 | RUSC1 antisense RNA 1 |
| SALRNA1 | SALRNA1 | SAL-RNA1, XLOCN/A023166 | senescence associated long non-coding RNA 1 |
| SALRNA2 | SALRNA2 | SAL-RNA2, XLOCN/A025931 | senescence associated long non-coding RNA 2 |
| SALRNA3 | SALRNA3 | SAL-RNA3, XLOCN/A025918 | senescence associated long non-coding RNA 3 |
| SAMD12-AS1 | SAMD12-AS1 | N/A | SAMD12 antisense RNA 1 |
| SAMMSON | SAMMSON | N/A | survival associated mitochondrial melanoma specific oncogenic non-coding RNA |
| SAP30L-AS1 | SAP30L-AS1 | FLJ38109, GALNT10-AS1 | SAP30L antisense RNA 1 (head to head) |
| SCAANT1 | SCAANT1 | SCA7/ATXN7 antisense RNA 1 | ATXN7-AS1 |
| SCHLAP1 | NONHSAT075852 | SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) | SChLAP1,PCAT11 |
| SEC24B-AS1 | SEC24B-AS1 | 1/2-SBSRNA4 | SEC24B antisense RNA 1 |
| SENCR | ENST00000526269.2 | smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA | N/A |
| SGMS1-AS1 | SGMS1-AS1 | N/A | SGMS1 antisense RNA 1 |
| SIRT1-AS | SIRT1-AS | N/A | SIRT1 antisense RNA |
| SMAD1-AS1 | SMAD1-AS1 | ENST00000513542 | SMAD1 antisense RNA 1 |
| SMAD5-AS1 | SMAD5-AS1 | DAMS | SMAD5 antisense RNA 1 |
| SMCR2 | SMCR2 | N/A | Smith-Magenis syndrome chromosome region, candidate 2 (non-protein coding) |
| SMCR5 | SMCR5 | NCRNA00034 | Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding) |
| SMCR6 | SMCR6 | N/A | Smith-Magenis syndrome chromosome region, candidate 6 (non-protein coding) |
| SMG7-AS1 | SMG7-AS1 | DKFZP564C196 | SMG7 antisense RNA 1 |
| SNAI3-AS1 | SNAI3-AS1 | MGC23284 | SNAI3 antisense RNA 1 |
| snaR | lnc-BSPH1-1:1,lnc-BSPH1-2:1 | small NF90-associated RNAs | small NF90-associated RNAs |
| SNHG1 | NONHSAT021826 | UHG, ENSG00000255717 | SNHG1:Small nucleolar RNA host gene 1;UHG: U22 host gene. |
| SNHG10 | SNHG10 | FLJ40557, NCRNA00063, LINC00063 | small nucleolar RNA host gene 10 |
| SNHG11 | SNHG11 | LINC00101 | small nucleolar RNA host gene 11 |
| SNHG12 | SNHG12 | PNAS-123, LINC00100, ASLNC04080 | small nucleolar RNA host gene 12 |
| SNHG14 | SNHG14 | NCRNA00214, UBE3A-AS | small nucleolar RNA host gene 14 |
| SNHG15 | SNHG15 | FLJ38860, MYO1GUT, Linc-Myo1g | small nucleolar RNA host gene 15 |
| SNHG16 | NONHSAT056039 | ncRAN | small nucleolar RNA host gene 16 |
| SNHG20 | SNHG20 | PRO0872, FLJ25582, DKFZp686L05235, SCARNA16HG | small nucleolar RNA host gene 20 |
| SNHG3 | lnc-OR10H5-1:1 | U17HG, linc1343, ENSG00000242125 | Small nucleolar RNA host gene 3 |
| SNHG4 | NONHSAT104072 | U19H, ENSG00000200959 | Small nucleolar RNA host gene 4 |
| SNHG5 | NONHSAT054526 | U50HG, ENSG00000203875 | Small nucleolar RNA host gene 5 |
| SNHG6 | lnc-TCF24-2:3 | U87HG, ENSG00000245910 | Small nucleolar RNA host gene 6 |
| SNHG7 | SNHG7 | MGC16037, NCRNA00061 | small nucleolar RNA host gene 7 |
| SNHG8 | SNHG8 | NCRNA00060, LINC00060 | small nucleolar RNA host gene 8 |
| SOCS2-AS1 | SOCS2-AS1 | N/A | SOCS2 antisense RNA 1 |
| SOX21-AS1 | SOX21-AS1 | N/A | SOX21 antisense RNA 1 (head to head) |
| SOX2-OT | SOX2-OT | DKFZp761J1324, NCRNA00043 | SOX2 overlapping transcript |
| SPATA3-AS1 | SPATA3-AS1 | N/A | SPATA3 antisense RNA 1 (head to head) |
| SPRY4-IT1 | lnc-NDFIP1-3:1 | AK024556, ENSG00000274721 | SPRY4 intronic transcript 1 (non-protein coding) |
| SRA | lnc-SRA1-1:1 | SRA1, ENSG00000213523 | Steroid receptor RNA Activator |
| ST7-AS1 | ST7-AS1 | ST7AS1 | ST7 antisense RNA 1 |
| ST7-AS2 | ST7-AS2 | ST7AS2 | ST7 antisense RNA 2 |
| ST7OT | NONHSAT122926,NONHSAT122918,NONHSAT122914,NONHSAT122932 | ST7OT1, ST7OT2, ST7OT3, ST7OT4, ST7AS1, ST7AS2, ST7AS3, ST7AS4, ENSG00000214188 | N/A |
| ST7-OT3 | ST7-OT3 | NCRNA00026 | ST7 overlapping transcript 3 |
| STAM-AS1 | STAM-AS1 | locus3182 | STAM antisense RNA 1 (head to head) |
| STX18-AS1 | STX18-AS1 | LOC100507266 | STX18 antisense RNA 1 (head to head) |
| TARID | ENST00000607033.1 | N/A | TCF21 antisense RNA inducing promoter demethylation |
| TCL6 | TCL6 | TCL6e1, TNG2, TNG1 | T-cell leukemia/lymphoma 6 (non-protein coding) |
| TDRG1 | NONHSAT112472 | LINC00532, lincRNA-NRN/A024015 | testis development related 1 (non-protein coding) |
| TEA-ncRNAs | NONHSAT035776 | ENSG00000251002 | T early alpha |
| TEX41 | TEX41 | DKFZp686O1327, LINC00953 | testis expressed 41 (non-protein coding) |
| TGFB2-OT1 | TGFB2-OT1 | FLJ11812 | TGFB2 overlapping transcript 1 |
| TH2LCRR | TH2LCRR | TH2-LCR | T helper type 2 locus control region associated RNA |
| THRIL | Lnc-DHX37-1:1 | Linc1992, TCONSN/A00020260, BRI3BP-AS1 | TNF and HNRNPL related immunoregulatory long non-coding RNA |
| TINCR | ENST00000448587.1 | FLJ90734, NCRNA00036, LINC00036, onco-lncRNA-16 | tissue differentiation-inducing non-protein coding RNA |
| TLX1NB | TLX1NB | TD1, TDI, APT-B7 | TLX1 neighbor |
| TMEM161B-AS1 | lnc-RASA1-3:23,lnc-RASA1-3:25 | AK082072,linc-POLR3G-8, ENSG00000247828 | TMEM161B antisense RNA 1 |
| TMEM92-AS1 | TMEM92-AS1 | RP11-893F2.9, lncRNA-508851, TCONSN/A00025237 | TMEM92 antisense RNA 1 |
| TMEM9B-AS1 | TMEM9B-AS1 | N/A | TMEM9B antisense RNA 1 |
| TncRNA | NONHSAT022116 | TSU | TncRNA: trophoblast noncoding RNA; TSU: trophoblast STAT utron (untranslated region of an mRNA). |
| TOLLIP-AS1 | TOLLIP-AS1 | N/A | TOLLIP antisense RNA 1 (head to head) |
| TP53COR1 | TP53COR1 | linc-p21, lincRNA-p21, Trp53cor1 | tumor protein p53 pathway corepressor 1 (non-protein coding) |
| TP53TG1 | TP53TG1 | HN/ARG012D21.9, LINC00096 | TP53 target 1 (non-protein coding) |
| TP73-AS1 | TP73-AS1 | PDAM | TP73 antisense RNA 1 |
| TRERNA1 | TRERNA1 | ncRNA-a7, treRNA | translation regulatory long non-coding RNA 1 |
| TRPM2-AS | TRPM2-AS | TRPM2-AS1 | TRPM2 antisense RNA |
| TSIX | TSIX | NCRNA00013, XIST-AS1, LINC00013 | TSIX transcript, XIST antisense RNA |
| TSPEAR-AS2 | TSPEAR-AS2 | N/A | TSPEAR antisense RNA 2 |
| TTC28-AS1 | TTC28-AS1 | KIAA1648 | TTC28 antisense RNA 1 |
| TTTY15 | TTTY15 | DKFZP434I143, NCRNA00138 | testis-specific transcript, Y-linked 15 (non-protein coding) |
| TTTY17A | TTTY17A | NCRNA00140 | testis-specific transcript, Y-linked 17A (non-protein coding) |
| TTTY3 | TTTY3 | TTY3, TTTY3A, LINC00121 | testis-specific transcript, Y-linked 3 (non-protein coding) |
| TTTY4 | TTTY4 | TTY4, TTTY4A, LINC00123 | testis-specific transcript, Y-linked 4 (non-protein coding) |
| TTTY5 | TTTY5 | TTY5, LINC00126 | testis-specific transcript, Y-linked 5 (non-protein coding) |
| TTTY6 | TTTY6 | TTY6, TTTY6A, LINC00127 | testis-specific transcript, Y-linked 6 (non-protein coding) |
| TTTY9B | TTTY9B | NCRNA00132 | testis-specific transcript, Y-linked 9B (non-protein coding) |
| TUG1 | NONHSAT084827 | ENSG00000253352 | taurine up-regulated gene 1(Young (2005)). |
| TUNAR | TUNAR | TUNA, HI-LNC78 | TCL1 upstream neural differentiation-associated RNA |
| TUSC7 | NONHSAT091315 | LINC00902, LOC285194, ENSG00000243197 | tumor suppressor candidate 7 (non-protein coding) |
| TUSC8 | TUSC8 | XLOCN/A010588 | tumor suppressor candidate 8 (non-protein coding) |
| UCA1 | lnc-OR10H5-1:1 | UCA1a, CUDR, UCAT1, LINC00178, NCRNA00178, GCAP2, GUCA1B, GUCA2, RP48, ENSG00000214049 | urothelial cancer associated 1 (non-protein coding) |
| UMODL1-AS1 | UMODL1-AS1 | FLJ33471 | UMODL1 antisense RNA 1 |
| VLDLR-AS1 | VLDLR-AS1 | N/A | VLDLR antisense RNA 1 |
| WAC-AS1 | WAC-AS1 | N/A | WAC antisense RNA 1 (head to head) |
| WASIR2 | WASIR2 | N/A | WASH and IL9R antisense RNA 2 |
| WDFY3-AS2 | WDFY3-AS2 | FBI4 | WDFY3 antisense RNA 2 |
| WFDC21P | Lnc-HEATR6-1:4 | WAP four-disulfide core domain 21, pseudogene | LOC645638, lnc-DC, LNCDC |
| WSPAR | WSPAR | TCONSN/A00009511-XLOCN/A004555, lncTCF7 | WNT signaling pathway activating non-coding RNA |
| WT1-AS | lnc-EIF3M-1:1 | WIT1, ENSG00000183242 | WT1 (Wilms' tumor 1) antisense transcript |
| XACT | XACT | N/A | X active specific transcript (non-protein coding) |
| XIST | NONHSAT137541 | ENSG00000229807 | X inactive-specific transcript |
| Y RNAs | lnc-PDIA4-1:1 | N/A | N/A |
| YAM1 | YAM1 | Yam-1 | YY1-associated myogenesis RNA 1 |
| ZBED3-AS1 | ZBED3-AS1 | N/A | ZBED3 antisense RNA 1 |
| ZEB1-AS1 | ZEB1-AS1 | N/A | ZEB1 antisense RNA 1 |
| ZEB2-AS1 | NONHSAT074775 | Zeb2NAT, ENSG00000238057 | Zeb2 natural antisense transcript |
| ZFAS1 | NONHSAT080206 | Znfx1 antisense, 1500012F01Rik, NCRNA00275, ENSG00000177410 | ZNFX1 antisense RNA 1 |
| ZFAT-AS1 | ZFAT-AS1 | SAS-ZFAT, NCRNA00070 | ZFAT antisense RNA 1 |
| Zfhx2as | ENST00000554403.1 | Zfh-5AS, ENSG00000157306 | zinc finger homeobox 2, antisense |
| ZIM2-AS1 | ZIM2-AS1 | ZIM2as | ZIM2 antisense RNA 1 |
| ZNF205-AS1 | ZNF205-AS1 | MGC3771 | ZNF205 antisense RNA 1 |
| ZNF252P-AS1 | ZNF252P-AS1 | N/A | ZNF252P antisense RNA 1 |
| ZNF436-AS1 | ZNF436-AS1 | FLJ90508 | ZNF436 antisense RNA 1 |
| ZNF582-AS1 | ZNF582-AS1 | N/A | ZNF582 antisense RNA 1 (head to head) |
| ZNF667-AS1 | ZNF667-AS1 | MORT | ZNF667 antisense RNA 1 (head to head) |
| ZRANB2-AS2 | ZRANB2-AS2 | N/A | ZRANB2 antisense RNA 2 (head to head) |
