| Species: | Homalosorus pycnocarpos |
| NCBI Taxonomy: | 86699 |
| Organelle: | Chloroplast (NC_035855.1) |
| Edited Genes: | 63 |
| Editing Events: | 144 |
| Gene | Editing Events | Genomic Position | Region | Strand | RNA | Type | Codons | Amino Acids |
|---|---|---|---|---|---|---|---|---|
| accD | 2 | 55902 55124 | CDS CDS | + + | mRNA mRNA | U-to-C C-to-U | UAA=>UAC ACG=>AUG | TERM=>Y T=>M |
| atpA | 3 | 11670 10746 10249-11772 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| atpB | 1 | 51066-52547 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| atpF | 3 | 12967-13111 11856-12265 13110 | CDS CDS NA | - - + | mRNA mRNA Unanotated Transcript | NA NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| atpH | 2 | 13482-13727 13726 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| atpI | 3 | 15166 15234 14489-15235 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C C-to-U NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ccsA | 1 | 111416 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| chlB | 3 | 4917-6461 6212 6080 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| chlL | 3 | 127683-128585 128584 127862 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| chlN | 1 | 126224-127609 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| infA | 3 | 76836 76782 76660-76902 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| matK | 2 | 1430-2953 2680 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhA | 2 | 118286-118843 116777-117334 | CDS CDS | - - | mRNA mRNA | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhB | 2 | 151018-151788 478-1221 | CDS CDS | - - | mRNA mRNA | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhC | 2 | 48683-49045 48685 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhD | 1 | 112760-114268 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhE | 1 | 114978-115280 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhF | 3 | 106775-109018 108658 109017 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ndhG | 2 | 115377-115970 115969 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhH | 1 | 118845-120044 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhI | 1 | 116102-116632 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhK | 1 | 47955-48692 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| Novel | 1 | 1220 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| petA | 2 | 59646 59656 | CDS CDS | + + | mRNA mRNA | U-to-C U-to-C | UAG=>UCG UAA=>UAC | TERM=>S TERM=>Y |
| petB | 1 | 73264 | CDS | + | mRNA | C-to-U | CGA=>UGA | R=>TERM |
| petD | 2 | 74120-74591 73474-73478 | CDS CDS | + + | mRNA mRNA | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| petN | 3 | 29726-29815 29728 29814 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA C-to-U C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| psaB | 2 | 39395 37192-39396 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psaC | 1 | 114406-114651 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbB | 2 | 70747 69224 | CDS CDS | + + | mRNA mRNA | C-to-U C-to-U | CAA=>UAA ACG=>AUG | Q=>TERM T=>M |
| psbC | 1 | 32101-33522 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbD | 1 | 33521 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| psbE | 2 | 61699-61950 61899 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbF | 1 | 61570-61689 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbH | 1 | 71471 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| psbI | 1 | 7835 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| psbL | 2 | 61432-61548 61547 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbM | 1 | 28338 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| rpl14 | 3 | 77637 78002 77635-78003 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | C-to-U C-to-U NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpl16 | 3 | 79405 79398-79406 78243-78647 | NA CDS CDS | + - - | Unanotated Transcript mRNA mRNA | C-to-U NA NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpl2 | 4 | 80988-81424 82147-82543 81365 82534 | CDS CDS NA NA | - - + + | mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rpl21 | 1 | 109599 | CDS | + | mRNA | U-to-C | UGA=>UGC | TERM=>C |
| rpl23 | 1 | 82618-82887 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| rpl36 | 2 | 76527 76415-76528 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpoA | 2 | 75674 74892-75914 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpoB | 7 | 23465-26680 24949 24997 24100 26452 26554 25963 | CDS NA NA NA NA NA NA | - + + + + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC1 | 5 | 21466 23413 23300 20630-22294 22983-23414 | NA NA NA CDS CDS | + + + - - | Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA mRNA | U-to-C C-to-U U-to-C NA NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC2 | 2 | 20285 16266-20516 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps11 | 2 | 75951-76343 76223 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps14 | 3 | 36965 36666 36664-36966 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | C-to-U C-to-U NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rps15 | 2 | 120417 120149-120418 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps16 | 4 | 3676-3903 4721-4762 4761 3693 | CDS CDS NA NA | - - + + | mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rps18 | 1 | 64655 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| rps19 | 2 | 80952 80675-80953 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps2 | 4 | 15729 15606 15693 15406-16122 | NA NA NA CDS | + + + - | Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rps3 | 3 | 79518-80174 80129 80173 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rps4 | 3 | 44700-45320 45119 45319 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rps7 | 2 | 138675 96673 | NA CDS | + + | Unanotated Transcript mRNA | U-to-C U-to-C | NA=>NA UAA=>UAC | NA=>NA TERM=>Y |
| rps8 | 2 | 77032-77430 77429 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ycf1 | 3 | 120733-125826 125825 124863 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ycf2 | 10 | 134644 134422 129778 132364 131467 102984 105570 100926 103881 100704 | NA NA NA NA NA CDS CDS CDS CDS CDS | + + + + + + + + + + | Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA mRNA mRNA mRNA mRNA | U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA UAA=>UAC UAA=>UAC UAA=>UAC UAA=>UAC UAA=>UAC | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA TERM=>Y TERM=>Y TERM=>Y TERM=>Y TERM=>Y |
| ycf3 | 5 | 43775-43899 42797-43025 42010-42171 42985 43898 | CDS CDS CDS NA NA | - - - + + | mRNA mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| ycf4 | 1 | 57462 | CDS | + | mRNA | C-to-U | CAA=>UAA | Q=>TERM |
( NA = Data Not Available )