| Species: | Deparia pycnosora |
| NCBI Taxonomy: | 65729 |
| Organelle: | Chloroplast (NC_035845.1) |
| Edited Genes: | 63 |
| Editing Events: | 152 |
| Gene | Editing Events | Genomic Position | Region | Strand | RNA | Type | Codons | Amino Acids |
|---|---|---|---|---|---|---|---|---|
| accD | 2 | 55307 54530 | CDS CDS | + + | mRNA mRNA | U-to-C C-to-U | UAA=>UCA ACG=>AUG | TERM=>S T=>M |
| atpA | 3 | 11509 10585 10088-11611 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| atpB | 1 | 50451-51932 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| atpF | 3 | 11692-12101 12802-12946 12945 | CDS CDS NA | - - + | mRNA mRNA Unanotated Transcript | NA NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| atpH | 2 | 13293-13538 13537 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| atpI | 3 | 15025 14957 14280-15026 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | C-to-U U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ccsA | 1 | 110667 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| chlB | 2 | 4811-6355 6106 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| chlL | 3 | 126837-127739 127016 127738 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| chlN | 2 | 126803 125428-126804 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| infA | 3 | 76164 76110 75988-76230 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| matK | 3 | 1446-2948 2690 2684 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ndhA | 3 | 117543-118100 116035-116592 118099 | CDS CDS NA | - - + | mRNA mRNA Unanotated Transcript | NA NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ndhB | 2 | 149990-150760 500-1237 | CDS CDS | - - | mRNA mRNA | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhC | 2 | 48009-48371 48011 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhD | 1 | 112022-113530 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhE | 1 | 114234-114536 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhF | 4 | 105961-108204 107844 108203 107568 | CDS NA NA NA | - + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| ndhG | 2 | 114625-115218 115217 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhH | 2 | 119279 118102-119280 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhI | 1 | 115360-115890 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhK | 1 | 47281-48018 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| Novel | 1 | 1236 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| petA | 2 | 59048 59039 | CDS CDS | + + | mRNA mRNA | U-to-C U-to-C | UAA=>UCA UAG=>UCG | TERM=>S TERM=>S |
| petB | 1 | 72601 | CDS | + | mRNA | C-to-U | CGA=>CUA | R=>L |
| petD | 1 | 72804 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| petN | 2 | 29114-29203 29202 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psaB | 2 | 38870 36667-38871 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psaC | 2 | 113912 113668-113913 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbB | 1 | 68559 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| psbC | 1 | 31528-32949 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbD | 1 | 32948 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| psbE | 3 | 61087-61338 61089 61287 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| psbF | 1 | 60958-61077 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbH | 1 | 70801 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| psbL | 2 | 60820-60936 60935 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbM | 1 | 28140 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| psbT | 1 | 70327 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| rpl14 | 3 | 77346 76981 76979-77347 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | C-to-U C-to-U NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpl16 | 3 | 78763 78756-78764 77593-77997 | NA CDS CDS | + - - | Unanotated Transcript mRNA mRNA | C-to-U NA NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpl2 | 4 | 80351-80787 81518-81914 81905 80728 | CDS CDS NA NA | - - + + | mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rpl21 | 1 | 108803 | CDS | + | mRNA | U-to-C | UGA=>UGC | TERM=>C |
| rpl22 | 3 | 79642-80019 80018 79773 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpl23 | 2 | 82252 81984-82253 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpl36 | 2 | 75857 75745-75858 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpoA | 2 | 75006 74224-75246 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpoB | 8 | 23305-26520 26292 24837 26394 24789 24090 25803 23940 | CDS NA NA NA NA NA NA NA | - + + + + + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC1 | 4 | 21281 23140 22823-23254 20445-22109 | NA NA CDS CDS | + + - - | Unanotated Transcript Unanotated Transcript mRNA mRNA | U-to-C U-to-C NA NA | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC2 | 2 | 20100 16054-20331 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps11 | 2 | 75283-75675 75555 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps14 | 2 | 36149 36114-36449 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps15 | 2 | 119653 119385-119654 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps16 | 4 | 4615-4656 3591-3821 4655 3611 | CDS CDS NA NA | - - + + | mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rps18 | 1 | 64059 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| rps19 | 2 | 80314 80037-80315 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps2 | 4 | 15533 15497 15410 15210-15926 | NA NA NA CDS | + + + - | Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rps3 | 3 | 78876-79532 79531 79487 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rps4 | 3 | 44148-44768 44567 44767 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rps7 | 2 | 137771 95916 | NA NA | + + | Unanotated Transcript mRNA | U-to-C U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps8 | 2 | 76367-76765 76764 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ycf1 | 3 | 119953-125058 124095 125057 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ycf2 | 14 | 133778 128921 131507 135109 130610 134915 133565 104766 98773 102180 98577 103077 99909 100122 | NA NA NA NA NA NA NA CDS CDS CDS CDS CDS CDS CDS | + + + + + + + + + + + + + + | Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA mRNA mRNA mRNA mRNA mRNA mRNA | U-to-C U-to-C U-to-C C-to-U U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C C-to-U U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA UAA=>UCA UGA=>UGC UAA=>UCA ACG=>AUG UAA=>UCA UAA=>UCA UAA=>UCA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA TERM=>S TERM=>C TERM=>S T=>M TERM=>S TERM=>S TERM=>S |
| ycf3 | 4 | 41483-41644 43229-43353 42270-42498 42458 | CDS CDS CDS NA | - - - + | mRNA mRNA mRNA Unanotated Transcript | NA NA NA U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
( NA = Data Not Available )