| Species: | Deparia lancea |
| NCBI Taxonomy: | 104666 |
| Organelle: | Chloroplast (NC_035844.1) |
| Edited Genes: | 60 |
| Editing Events: | 148 |
| Gene | Editing Events | Genomic Position | Region | Strand | RNA | Type | Codons | Amino Acids |
|---|---|---|---|---|---|---|---|---|
| accD | 2 | 54980 54203 | CDS CDS | + + | mRNA mRNA | U-to-C C-to-U | UAA=>UCA ACG=>AUG | TERM=>S T=>M |
| atpA | 3 | 10296 11220 9799-11322 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| atpB | 2 | 50112-51593 51592 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| atpF | 3 | 11403-11812 12517-12661 12660 | CDS CDS NA | - - + | mRNA mRNA Unanotated Transcript | NA NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| atpH | 2 | 13016-13261 13260 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| atpI | 3 | 14748 14680 14003-14749 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | C-to-U U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ccsA | 1 | 110468 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| chlB | 2 | 4816-6360 6111 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| chlL | 3 | 126656-127558 127557 126835 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| chlN | 2 | 126592 125247-126593 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| infA | 3 | 75859 75805 75683-75925 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| matK | 3 | 1442-2947 2683 2689 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ndhA | 3 | 115843-116400 117359-117916 117915 | CDS CDS NA | - - + | mRNA mRNA Unanotated Transcript | NA NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ndhB | 2 | 501-1238 149875-150645 | CDS CDS | - - | mRNA mRNA | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhC | 2 | 47684-48046 47686 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhD | 1 | 111823-113331 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhE | 1 | 114037-114339 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhF | 4 | 105726-107960 107959 107324 107600 | CDS NA NA NA | - + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| ndhG | 2 | 114433-115026 115025 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhH | 2 | 119095 117918-119096 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhI | 1 | 115168-115698 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhK | 1 | 46956-47693 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| Novel | 1 | 1237 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| petA | 2 | 58706 58715 | CDS CDS | + + | mRNA mRNA | U-to-C U-to-C | UAG=>UCG UAA=>UCA | TERM=>S TERM=>S |
| petB | 1 | 72282 | CDS | + | mRNA | C-to-U | CAA=>UAA | Q=>TERM |
| petD | 1 | 72486 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| petN | 2 | 28835-28924 28923 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psaB | 2 | 38541 36338-38542 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psaC | 2 | 113713 113469-113714 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbB | 2 | 68209 69732 | CDS CDS | + + | mRNA mRNA | C-to-U C-to-U | ACG=>AUG CAA=>UAA | T=>M Q=>TERM |
| psbC | 1 | 31196-32617 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbD | 1 | 32616 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| psbE | 2 | 60772-61023 60972 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbF | 1 | 60643-60762 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbL | 2 | 60505-60621 60620 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbM | 1 | 27872 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| rpl14 | 2 | 76666 76664-77032 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpl16 | 3 | 78464 78457-78465 77290-77694 | NA CDS CDS | + - - | Unanotated Transcript mRNA mRNA | C-to-U NA NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpl2 | 4 | 80051-80487 81215-81611 80428 81602 | CDS CDS NA NA | - - + + | mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rpl21 | 1 | 108552 | CDS | + | mRNA | U-to-C | UGA=>UGC | TERM=>C |
| rpl22 | 3 | 79343-79720 79474 79719 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpl23 | 2 | 81946 81678-81947 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpl36 | 2 | 75551 75439-75552 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpoA | 2 | 74700 73912-74940 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpoB | 8 | 23035-26250 26022 26124 24519 25533 23670 23820 24567 | CDS NA NA NA NA NA NA NA | - + + + + + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC1 | 5 | 22870 22983 21007 20171-21835 22553-22984 | NA NA NA CDS CDS | + + + - - | Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA mRNA | U-to-C C-to-U U-to-C NA NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC2 | 1 | 15777-20057 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| rps11 | 2 | 74977-75369 75249 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps15 | 2 | 119469 119201-119470 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps16 | 4 | 4620-4661 3574-3819 4660 3600 | CDS CDS NA NA | - - + + | mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rps18 | 1 | 63719 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| rps19 | 2 | 80015 79738-80016 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps2 | 4 | 15220 15256 15133 14933-15649 | NA NA NA CDS | + + + - | Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rps3 | 3 | 78577-79233 79232 79188 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rps4 | 3 | 43823-44443 44242 44442 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rps7 | 2 | 137593 95677 | NA CDS | + + | Unanotated Transcript mRNA | U-to-C U-to-C | NA=>NA UAA=>CAA | NA=>NA TERM=>Q |
| rps8 | 2 | 76056-76454 76453 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ycf1 | 3 | 119767-124872 123909 124871 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| ycf2 | 14 | 134938 133394 134744 130439 128750 131336 133607 98528 101935 99664 102832 104521 98332 99877 | NA NA NA NA NA NA NA CDS CDS CDS CDS CDS CDS CDS | + + + + + + + + + + + + + + | Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA mRNA mRNA mRNA mRNA mRNA mRNA | C-to-U U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C C-to-U U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA UGA=>UGC UAA=>UCA UAA=>UCA UAA=>UCA UAA=>UCA ACG=>AUG UAA=>UCA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA TERM=>C TERM=>S TERM=>S TERM=>S TERM=>S T=>M TERM=>S |
| ycf3 | 4 | 41156-41317 42907-43031 41943-42171 42131 | CDS CDS CDS NA | - - - + | mRNA mRNA mRNA Unanotated Transcript | NA NA NA U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
( NA = Data Not Available )