| Species: | Asplenium prolongatum |
| NCBI Taxonomy: | 78457 |
| Organelle: | Chloroplast (NC_035838.1) |
| Edited Genes: | 58 |
| Editing Events: | 130 |
| Gene | Editing Events | Genomic Position | Region | Strand | RNA | Type | Codons | Amino Acids |
|---|---|---|---|---|---|---|---|---|
| accD | 2 | 53923 54700 | CDS CDS | + + | mRNA mRNA | C-to-U U-to-C | ACG=>AUG UAA=>UCA | T=>M TERM=>S |
| atpA | 3 | 10225 11149 9728-11251 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| atpB | 1 | 49856-51337 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| atpF | 3 | 11335-11744 12456-12600 12599 | CDS CDS NA | - - + | mRNA mRNA Unanotated Transcript | NA NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| atpH | 2 | 12975-13220 13219 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| atpI | 2 | 14668 13991-14737 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| cemA | 3 | 57537 56799 56475 | CDS CDS CDS | + + + | mRNA mRNA mRNA | U-to-C U-to-C U-to-C | UGA=>UGC UAA=>UAC UGA=>UGC | TERM=>C TERM=>Y TERM=>C |
| chlB | 2 | 4781-6325 6076 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| chlL | 2 | 126466-127191 127190 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| chlN | 1 | 124841-126223 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| infA | 3 | 75276 75222 75106-75342 | NA NA CDS | + + - | Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| matK | 2 | 1388-2893 2635 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhA | 2 | 116868-117431 115378-115935 | CDS CDS | - - | mRNA mRNA | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhB | 2 | 150036-150800 438-1175 | CDS CDS | - - | mRNA mRNA | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhC | 2 | 47689-48051 47691 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhD | 1 | 111436-112944 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhE | 1 | 113611-113913 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| ndhF | 4 | 105644-107860 107859 107224 107500 | CDS NA NA NA | - + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA C-to-U U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| ndhG | 2 | 113985-114584 114583 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhI | 2 | 114720-115238 115094 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ndhK | 1 | 46967-47698 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| Novel | 1 | 1174 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| petA | 1 | 58432 | CDS | + | mRNA | U-to-C | UAG=>UCG | TERM=>S |
| petB | 1 | 70360 | CDS | + | mRNA | U-to-C | AUU=>AUC | I=>I |
| petD | 1 | 72009 | CDS | + | mRNA | U-to-C | AUU=>AUC | I=>I |
| petN | 2 | 29162-29251 29250 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psaB | 2 | 38441 36238-38442 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psaC | 1 | 113084-113329 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbB | 2 | 67827 69350 | CDS CDS | + + | mRNA mRNA | C-to-U C-to-U | ACG=>AUG CAA=>UAA | T=>M Q=>TERM |
| psbC | 1 | 31463-32884 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbD | 1 | 32883 | NA | + | Unanotated Transcript | C-to-U | NA=>NA | NA=>NA |
| psbE | 1 | 60479-60730 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| psbF | 2 | 60350-60469 60468 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbH | 1 | 70073 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| psbL | 2 | 60212-60328 60327 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| psbM | 1 | 27827 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| rpl14 | 2 | 76428 76061-76429 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpl16 | 1 | 77837 | NA | + | Unanotated Transcript | U-to-C | NA=>NA | NA=>NA |
| rpl2 | 4 | 80525-80921 79361-79794 79735 80912 | CDS CDS NA NA | - - + + | mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rpl22 | 4 | 78649-79023 78777 78669 79022 | CDS NA NA NA | - + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C C-to-U | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rpl23 | 1 | 80990-81262 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| rpoA | 2 | 74126 73341-74366 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rpoB | 8 | 23034-26249 26123 24566 26021 23669 24518 25532 23819 | CDS NA NA NA NA NA NA NA | - + + + + + + + | mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rpoC1 | 3 | 22868 20169-21836 22551-22982 | NA CDS CDS | + - - | Unanotated Transcript mRNA mRNA | U-to-C NA NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rpoC2 | 2 | 19798 15752-20029 | NA CDS | + - | Unanotated Transcript mRNA | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps11 | 2 | 74402-74794 74674 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps15 | 2 | 118996 118728-118997 | NA CDS | + - | Unanotated Transcript mRNA | C-to-U NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps16 | 5 | 4581-4622 3563-3793 3583 4621 3604 | CDS CDS NA NA NA | - - + + + | mRNA mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript | NA NA U-to-C C-to-U U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| rps18 | 1 | 63347 | CDS | + | mRNA | C-to-U | ACG=>AUG | T=>M |
| rps19 | 1 | 79041-79319 | CDS | - | mRNA | NA | NA=>NA | NA=>NA |
| rps2 | 4 | 15127 15214 15250 14927-15643 | NA NA NA CDS | + + + - | Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA | U-to-C U-to-C U-to-C NA | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| rps3 | 3 | 77877-78530 78485 78529 | CDS NA NA | - + + | mRNA Unanotated Transcript Unanotated Transcript | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| rps4 | 2 | 43721-44341 44340 | CDS NA | - + | mRNA Unanotated Transcript | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| rps7 | 4 | 138794 138636 94127 93968 | NA NA CDS CDS | + + + + | Unanotated Transcript Unanotated Transcript mRNA mRNA | C-to-U U-to-C U-to-C C-to-U | NA=>NA NA=>NA UAA=>UCA GCG=>GUG | NA=>NA NA=>NA TERM=>S A=>V |
| ycf1 | 2 | 119317-124458 123507 | CDS NA | - + | mRNA Unanotated Transcript | NA U-to-C | NA=>NA NA=>NA | NA=>NA NA=>NA |
| ycf2 | 8 | 134394 131433 134607 135771 98369 101330 98156 96993 | NA NA NA NA CDS CDS CDS CDS | + + + + + + + + | Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA mRNA mRNA mRNA | U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C | NA=>NA NA=>NA NA=>NA NA=>NA UAA=>UCA UAA=>UCA UAA=>UCA UGA=>UGC | NA=>NA NA=>NA NA=>NA NA=>NA TERM=>S TERM=>S TERM=>S TERM=>C |
| ycf3 | 5 | 41834-42062 41053-41214 42796-42920 42022 42919 | CDS CDS CDS NA NA | - - - + + | mRNA mRNA mRNA Unanotated Transcript Unanotated Transcript | NA NA NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA |
| ycf4 | 1 | 56293 | CDS | + | mRNA | C-to-U | CAG=>UAG | Q=>TERM |
( NA = Data Not Available )