NGDC BIT

Tool Configuration

Draw a threshold dotplot of two sequence

Data

Input data text

Upload a file

Input data text

Upload a file

Parameters

References

Rice P., Longden I. and Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000 16(6):276-277

Instructions

Draw a threshold dotplot of two sequence

dotmatcher generates a dotplot from two input sequences. The dotplot is an intuitive graphical representation of the regions of similarity between two sequences. All positions from the first input sequence are compared with all positions from the second input sequence using a specified substitution matrix. The two sequences are the axes of the rectangular dotplot. Wherever there is "similarity" between a position from each sequence a dot is plotted. The threshold conditions for "similarity" are defined by the user.

Contributor(s)

Zhenglin Du

bit@big.ac.cn

Data

Input data text

Upload a file

Input data text

Upload a file

Parameters

References

Rice P., Longden I. and Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000 16(6):276-277

Instructions

Draw a threshold dotplot of two sequence

dotmatcher generates a dotplot from two input sequences. The dotplot is an intuitive graphical representation of the regions of similarity between two sequences. All positions from the first input sequence are compared with all positions from the second input sequence using a specified substitution matrix. The two sequences are the axes of the rectangular dotplot. Wherever there is "similarity" between a position from each sequence a dot is plotted. The threshold conditions for "similarity" are defined by the user.

Contributor(s)

Zhenglin Du

bit@big.ac.cn

Result Preview

Example output and submitted task results are displayed here.

#Runs 1833

Open result Download result