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Dotmatcher
Sequences type
Protein
Nucleotide
Protein

Data

Sequence A
Example file
Sequence B
Example file

Parameters

EDNAFULL
DNAFULL
DNAMAT
false
True
False
svg
SVG
PostScript
References 
Rice P., Longden I. and Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000 16(6):276-277
Instructions 

Draw a threshold dotplot of two sequence

dotmatcher generates a dotplot from two input sequences. The dotplot is an intuitive graphical representation of the regions of similarity between two sequences. All positions from the first input sequence are compared with all positions from the second input sequence using a specified substitution matrix. The two sequences are the axes of the rectangular dotplot. Wherever there is "similarity" between a position from each sequence a dot is plotted. The threshold conditions for "similarity" are defined by the user.

Contributor(s)
Zhenglin Du
bit@big.ac.cn

Data

Sequence A
Example file
Sequence B
Example file

Parameters

EBLOSUM62
BLOSUM30
BLOSUM35
BLOSUM40
BLOSUM45
BLOSUM50
BLOSUM55
BLOSUM60
BLOSUM62
BLOSUM75
BLOSUM80
BLOSUM85
BLOSUM90
BLOSUM Clustered
PAM10
PAM20
PAM30
PAM40
PAM50
PAM60
PAM70
PAM80
PAM90
PAM100
PAM110
PAM120
PAM130
PAM140
PAM150
PAM160
PAM170
PAM180
PAM190
PAM200
PAM210
PAM220
PAM230
PAM240
PAM250
PAM260
PAM270
PAM280
PAM290
PAM300
PAM310
PAM320
PAM330
PAM340
PAM350
PAM360
PAM370
PAM380
PAM390
PAM400
PAM410
PAM420
PAM430
PAM440
PAM450
PAM460
PAM470
PAM480
PAM490
PAM500
false
True
False
svg
SVG
PostScript
References 
Rice P., Longden I. and Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000 16(6):276-277
Instructions 

Draw a threshold dotplot of two sequence

dotmatcher generates a dotplot from two input sequences. The dotplot is an intuitive graphical representation of the regions of similarity between two sequences. All positions from the first input sequence are compared with all positions from the second input sequence using a specified substitution matrix. The two sequences are the axes of the rectangular dotplot. Wherever there is "similarity" between a position from each sequence a dot is plotted. The threshold conditions for "similarity" are defined by the user.

Contributor(s)
Zhenglin Du
bit@big.ac.cn
Open Result