Home
Category
Visualization
ManhattanQ-QPM-AdiversityPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-TestPM-Marker-RFscorePM-NetworkPM-PcaPM-Pcoa Bar Box Comutation Dot Forest Heatmap Histogram Lollipop MafSummary Oncoprint Survival Maftitv Upset Venn
Sequence alignment
NeedleWaterDotmatcherDotpathDottupPolydotPM-Bdiversity BLAST
RNA Expression
CIRI3CIRI-deepEditingFactorDetectorFunGen RNA-seq AnalysisCancer Alternative Splicing AnalysisCCLHunterEditing site identificationDisease predictionGene-disease network constructionCross-disease analysisEditing site annotationBulk RNA-seq Data AnalysisSingle-cell RNA-seq Data AnalysisVisualization of scRNA-seq Data Analysis Results
Variome analysis
Rice Yield EstimationWheat Head EstimationRice Varieties IdentificationLeadSNPFinderGeneFindereasyGWASExpPatternHapSnapVersionMapSeqFetchBarcodeBLASTBarcodeFinderHapMapHaplotype analysis
Epigenome analysis
MRAS Age PredictorDMR ToolkitBS-RNAGMQNEWAS Network VisualizationEnrichment & AnnotationEnrichment analysis in nucleosome occupancyComparative analysis in nucleosomesIDMPDMR AnnotationLollipop Plotter
Long non-coding RNA
LGCID conversionlncbook-BLASTClassificationFunctional PredictionLncBot
Virus
VISTAVENASFastq-to-VariantsCOVID-19 genome variation annotationCOVID-19 haplotype analysisPangolin COVID-19 Lineage AssignerMonkeypox virus genome variation identificationMonkeypox virus genome variation annotationGenome TracingDenovo AssemblyGenome AnnotationSeqQCEvolutionary treeGenealogy and Evolutionary AnalysisMcAN
Single-cell omics
SCSESGOTSpaMIFGOTTACOS Cell Type ComparatorCell Type PredictorUCASpatialBroCOLI
Image Processing
Image CroppingImage ResizingImage FlippingImage DenoisingImage Partitioning
Others
Homolog FinderCross-stages analysisCross-species analysisCross-model analysisncRNA-eQTLComposition analysisMIALUTLSRSAPAcatcher
User Manual
Visualization
ManhattanQ-QPM-AdiversityPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-TestPM-Marker-RFscorePM-NetworkPM-PcaPM-Pcoa Bar Box Comutation Dot Forest Heatmap Histogram Lollipop MafSummary Oncoprint Survival Maftitv Upset Venn
Home Visualization
Maftitv
Data

Parameters

FALSE
FALSE
TRUE
both
both
bar
box
FALSE
TRUE
FALSE
NULL
NULL
npg
aaas
nejm
lancet
jama
jco
ucscgb
d3
locuszoom
igv
uchicago
startrek
tron
futurama
rickandmorty
simpsons
References

The figure was plotted online using the bioinformatics toolkit (BIT) from the National Genomics Data Center, part of the China National Center for Bioinformation [1]. The R script was implemented with maftools.

[1] "Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022." Nucleic acids research vol. 50,D1 (2022): D27-D38. doi:10.1093/nar/gkab951

Instructions

This app draw Titv plot for a given dataset.

input format is MAF [https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/]
---------------------------------------------
The palettes are derived from package ggsci :
npg:   Nature Publishing Group
aaas:  American Association for the Advancement of Science
nejm:  The New England Journal of Medicine
lancet:  Lancet Oncology
jama:  The Journal of the American Medical Association
jco:  Journal of Clinical Oncology
ucscgb:  The UCSCGB palette is from the colors used by UCSC Genome Browser for representing chromosomes
d3:  The D3 palette is from the categorical colors used by D3.js (version 3.x and before).
locuszoom:  The LocusZoom palette is based on the colors used by LocusZoom
igv:  The IGV palette is from the colors used by Integrative Genomics Viewer for representing chromosomes
uchicago:  The UChicago palette is based on the colors used by the University of Chicago
startrek:  This palette is inspired by the (uniform) colors in Star Trek
tron:  This palette is inspired by the colors used in Tron Legacy
futurama:  This palette is inspired by the colors used in the TV show Futurama
rickandmorty:  This palette is inspired by the colors used in the TV show Rick and Morty
simpsons:  This palette is inspired by the colors used in the TV show The Simpsons
                                        
Contributor(s)
Xinchang Zheng
R programmer
Last modified: 2025-03-26
#Runs
66