Yuzhu Chen JL, Yufeng Zhang, Mingqian Zhang, Zheng Sun, Gongchao Jing, Shi Huang , Xiaoquan Su. Parallel-Meta Suite: interactive and rapid microbiome data analysis on multiple platforms. 2022.
https://github.com/qdu-bioinfo/parallel-meta-suite

Alpha diversity index calculation and plotting

Calculate biodiversity indices (such as Shannon, Simpson, and Chao1). Based on the analysis results, generate textual outputs containing diversity indices and PDF outputs of box plots of the diversity indices. This also includes performing statistical tests on the data (such as the Wilcoxon test and the Kruskal-Wallis test), and visualizing the analysis of correlations between variables.