NGDC Cloud

Input data text:

Upload a file

Parameters

Width

Height

N sets

N intersects

Keep order

Matrix color

Main bar color

Main bar y label

Main bar y max

Sets x label

Point size

Line size

Att pos

Att color

Order by

Decreasing

Show numbers

Number angles

Matrix dot alpha

Text scale

Scale sets

Sets bar color

Set size angles

Set size numbers

Set size show

Instructions

This app draw Upset plot for a given dataset.

input format is a matrix like this:
A	B	C	D	E
1	0	1	0	0
0	1	1	1	1
0	1	1	1	1
0	1	1	0	1
1	0	0	0	0
0	0	1	0	0
0	0	1	0	0
1	1	1	1	0
0	1	1	0	0
0	1	1	0	0
---------------------------------------------

References

The figure was plotted online using the bioinformatics toolkit (BIT) from the National Genomics Data Center, part of the China National Center for Bioinformation [1]. The R script was implemented with UpsetR.

[1] "Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022." Nucleic acids research vol. 50,D1 (2022): D27-D38. doi:10.1093/nar/gkab951

Contributor(s)

Xinchang Zheng

R programmer

Last modified: 2022-03-29