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Upset
Data

Parameters

FALSE
FALSE
TRUE
bottom
bottom
top
freq
freq
degree
TRUE
TRUE
FALSE
TRUE
TRUE
FALSE
identity
identity
log10
log2
Instructions

This app draw Upset plot for a given dataset.

input format is a matrix like this:
A	B	C	D	E
1	0	1	0	0
0	1	1	1	1
0	1	1	1	1
0	1	1	0	1
1	0	0	0	0
0	0	1	0	0
0	0	1	0	0
1	1	1	1	0
0	1	1	0	0
0	1	1	0	0
---------------------------------------------
                                        
References

The figure was plotted online using the bioinformatics toolkit (BIT) from the National Genomics Data Center, part of the China National Center for Bioinformation [1]. The R script was implemented with UpsetR.

[1] "Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022." Nucleic acids research vol. 50,D1 (2022): D27-D38. doi:10.1093/nar/gkab951

Contributor(s)
Xinchang Zheng
R programmer
Last modified: 2022-03-29