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Visualization
BarBoxComutationDotForestHeatmapHistogramLollipopMafsummaryMaftitvManhattanOncoprintPM-AdiversityPM-comp-corPM-comp-funcPM-comp-taxaPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-RFscorePM-Marker-TestPM-NetworkPM-PcaPM-PcoaPM-plot-taxaPM-rare-curvQ-QSurvivalUpsetVenn
Home Visualization
Upset
program
Upset
Upset

Data

Input
Example file

Parameters

FALSE
TRUE
FALSE
bottom
bottom
top
freq
freq
degree
TRUE
TRUE
FALSE
TRUE
TRUE
FALSE
identity
identity
log10
log2
References

The figure was plotted online using the bioinformatics toolkit (BIT) from the National Genomics Data Center, part of the China National Center for Bioinformation [1]. The R script was implemented with UpsetR.

[1] "Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022." Nucleic acids research vol. 50,D1 (2022): D27-D38. doi:10.1093/nar/gkab951

Instructions

Draw an upset for the given dataset

input format is a matrix like this:
A	B	C	D	E
1	0	1	0	0
0	1	1	1	1
0	1	1	1	1
0	1	1	0	1
1	0	0	0	0
0	0	1	0	0
0	0	1	0	0
1	1	1	1	0
0	1	1	0	0
0	1	1	0	0
---------------------------------------------

Contributor(s)
Xinchang Zheng
zhengxinchang@big.ac.cn
#Runs
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