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Visualization
BarBoxComutationDotForestHeatmapHistogramLollipopMafsummaryMaftitvManhattanOncoprintPM-AdiversityPM-comp-corPM-comp-funcPM-comp-taxaPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-RFscorePM-Marker-TestPM-NetworkPM-PcaPM-PcoaPM-plot-taxaQ-QSurvivalUpsetVenn
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Comutation
program
Comutation
Comutation

Data

Input
Example file

Parameters

FALSE
FALSE
TRUE
TRUE
TRUE
FALSE
TRUE
TRUE
FALSE
all
all
sig
cooccur
cooccur
mutexcl
References

The figure was plotted online using the bioinformatics toolkit (BIT) from the National Genomics Data Center, part of the China National Center for Bioinformation [1]. The R script was implemented with maftools.

[1] "Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022." Nucleic acids research vol. 50,D1 (2022): D27-D38. doi:10.1093/nar/gkab951

Instructions

Draw a comutation plot for the given dataset

input format is MAF [https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/]

Contributor(s)
Xinchang Zheng
zhengxinchang@big.ac.cn
#Runs
228
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