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Sequence alignment
BLASTDotmatcherDotpathDottupNeedlePM-BdiversityPM-extract-rnaPM-parallel-metaPolydotWater
Home Sequence alignment
PM-Bdiversity
program
PM-Bdiversity
PM-Bdiversity

Data

Data(dist)
Example file
Meta(txt)
Example file

Parameters

References
Yuzhu Chen JL, Yufeng Zhang, Mingqian Zhang, Zheng Sun, Gongchao Jing, Shi Huang , Xiaoquan Su. Parallel-Meta Suite: interactive and rapid microbiome data analysis on multiple platforms. 2022.
https://github.com/qdu-bioinfo/parallel-meta-suite
Instructions

Beta diversity PERMANOVA and ANOSIM tests and plotting using distance matrices

Conduct ANOVA and ANOSIM statistical tests on each group of metadata, and record the results in log files and summary tables. Generate box plots or scatter plots of distance matrices based on categorical or continuous metadata. Perform corresponding statistical tests such as t-test and Wilcoxon test.

Contributor(s)
XiaoQuan Su
suxq@qdu.edu.cn
#Runs
50
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