Visualization
ManhattanQ-Q Bar Box Comutation Dot Forest Heatmap Histogram Lollipop MafSummary Oncoprint Survival Maftitv Upset Venn
Sequence alignment
NeedleWaterDotmatcherDotpathDottupPolydot BLAST
Home Sequence alignment
Dotpath
Program
Dotpath
Dotpath

Data

Sequence A
Example file
Sequence B
Example file

Parameters

svg
SVG
PostScript
References 
Rice P., Longden I. and Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000 16(6):276-277
Instructions 

Draw a non-overlapping wordmatch dotplot of two sequences

dotpath generates a dotplot from two input sequences. The dotplot is an intuitive graphical representation of the regions of similarity between two sequences. Sequence "words" of a user-specified length are compared and all exact word matches between the two sequences are recorded. The set of the longest possible but non-overlapping matches is identified. The two sequences are the axes of the rectangular dotplot. Wherever there is an exact matching word in the two sequences a line is plotted.

Contributor(s)
Zhenglin Du
bit@big.ac.cn
Open Result