Yuzhu Chen JL, Yufeng Zhang, Mingqian Zhang, Zheng Sun, Gongchao Jing, Shi Huang , Xiaoquan Su. Parallel-Meta Suite: interactive and rapid microbiome data analysis on multiple platforms. 2022.
https://github.com/qdu-bioinfo/parallel-meta-suite

Hierarchical clustering by distance matrix

Cluster distance data using a hierarchical clustering method (average linkage is the default). Draw a hierarchical clustering dendrogram in a PDF file and add rectangular boxes to highlight the clustering results based on the specified number of groups.