Home
Category
Visualization
BarBoxComutationDotForestHeatmapHistogramLollipopMafsummaryMaftitvManhattanOncoprintPM-AdiversityPM-comp-corPM-comp-funcPM-comp-taxaPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-RFscorePM-Marker-TestPM-NetworkPM-PcaPM-PcoaPM-plot-taxaQ-QSurvivalUpsetVenn
Sequence alignment
BLASTDotmatcherDotpathDottupNeedlePM-BdiversityPM-extract-rnaPM-parallel-metaPolydotWater
RNA Expression
Bulk RNA-seq Data AnalysisCancer Alternative Splicing AnalysisCCLHunterCIRI-deepCIRI3Cross-disease analysisDisease predictionEditing site annotationEditing site identificationEditingFactorDetectorFunGenGene-disease network constructionNCSelPredRNA-seq AnalysisSingle-cell RNA-seq Data AnalysisSPIRALTIVar diffTIVar predictVisualization of scRNA-seq Data Analysis Results
Variome analysis
BarcodeBLASTBarcodeFindereasyGWASExpPatternGeneFinderHaplotype analysisHapMapHapSnapLeadSNPFinderRice Varieties IdentificationRice Yield EstimationSeqFetchVersionMapWheat Head Estimation
Epigenome analysis
Age PredictorBS-RNAComparative analysis in nucleosomesDMR AnnotationDMR ToolkitEnrichment & AnnotationEnrichment analysis in nucleosome occupancyEWAS Network VisualizationGMQNIDMPLollipop PlotterMRAS
Long non-coding RNA
ClassificationFunctional PredictionID conversionLGClncbook-BLASTLncBot
Virus
COVID-19 genome variation annotationCOVID-19 haplotype analysisDenovo AssemblyEvolutionary treeFastq-to-VariantsGenealogy and Evolutionary AnalysisGenome AnnotationGenome TracingMcANMonkeypox virus genome variation annotationMonkeypox virus genome variation identificationPangolin COVID-19 Lineage AssignerSeqQCVENASVISTA
Single-cell omics
BroCOLICell Type ComparatorCell Type PredictorFGOTGOTSCSESSpaMITACOSUCASpatial
Image Processing
Image CroppingImage DenoisingImage FlippingImage PartitioningImage Resizing
Others
APAcatcherComposition analysisCross-model analysisCross-species analysisCross-stages analysisHomolog FinderLUTLSRSMIAncRNA-eQTLPM-predict-func
User Manual
Visualization
BarBoxComutationDotForestHeatmapHistogramLollipopMafsummaryMaftitvManhattanOncoprintPM-AdiversityPM-comp-corPM-comp-funcPM-comp-taxaPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-RFscorePM-Marker-TestPM-NetworkPM-PcaPM-PcoaPM-plot-taxaQ-QSurvivalUpsetVenn
Home Visualization
Histogram
program
Histogram
Histogram

Data

Input
Example file

Parameters

continuous
continuous
discrete
0
0
15
30
45
60
90
0
0
15
30
45
60
90
d3
npg
aaas
nejm
lancet
jama
jco
ucscgb
d3
locuszoom
igv
uchicago
startrek
tron
futurama
rickandmorty
simpsons
References

The figure was plotted online using the bioinformatics toolkit (BIT) from the National Genomics Data Center, part of the China National Center for Bioinformation [1]. The R script was implemented with ggplot2.

[1] "Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022." Nucleic acids research vol. 50,D1 (2022): D27-D38. doi:10.1093/nar/gkab951

Instructions

Draw a histogram for the given dataset

The input file format example:
discrete input
letter #header
a
c
e
b
b
c
--------------------
continuous input
letter #header
1.2
3
4.4
6
11
8
---------------------------------------------
The palettes are derived from package ggsci :
npg: Nature Publishing Group
aaas:  American Association for the Advancement of Science
nejm:  The New England Journal of Medicine
lancet:  Lancet Oncology
jama:  The Journal of the American Medical Association
jco: Journal of Clinical Oncology
ucscgb:  The UCSCGB palette is from the colors used by UCSC Genome Browser for representing chromosomes
d3:  The D3 palette is from the categorical colors used by D3.js (version 3.x and before).
locuszoom: The LocusZoom palette is based on the colors used by LocusZoom
igv: The IGV palette is from the colors used by Integrative Genomics Viewer for representing chromosomes
uchicago:  The UChicago palette is based on the colors used by the University of Chicago
startrek:  This palette is inspired by the (uniform) colors in Star Trek
tron:  This palette is inspired by the colors used in Tron Legacy
futurama:  This palette is inspired by the colors used in the TV show Futurama
rickandmorty:  This palette is inspired by the colors used in the TV show Rick and Morty
simpsons:  This palette is inspired by the colors used in the TV show The Simpsons

Contributor(s)
Xinchang Zheng
zhengxinchang@big.ac.cn
#Runs
159
Open Result